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Detailed information on CNT30690536


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553284Oryza sativaOryza glaberrima33.4443.8188.89216reverse complement
CNT30369160Oryza sativaOryza glumipatula69.210096.64447forward
CNT30107943Oryza sativaOryza longistaminata70.4349.1991.21455reverse complement
CNT3099761Oryza sativaOryza rufipogon36.0730.5898.28233forward
CNT30575904Oryza sativaOryza barthii26.324.4188.82170reverse complement

Expression of CNT30690536

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MVLLLRLGVHTDAILGIYPKGTVMHIAMSSTRARKK*

>peptide 2 (56 aa)
MHHREGKGLMERWALVKRKEVGTCIVVYKIVKAGTFHRCTAWSGRSSGSAKYENIDF

Sequence

>CNT30690536
CCCAGTTTAATACCTTTTCATTTTTCCATAACAACAGTAATGTAGCCTAACAAAAATGTAGCTCATGCCAGATTATCAGCAATAGCTGGCTGAGACTTAC
CTAATGCAACTTTTCATGGCACATGTTTACCCTGAAAATAAGAAGCATAGCAAAGTAGTAGACATTCAGAGTAATAATAATTAAGAGCTATAGGATTTCA
ACCATAAGTGCTCGTTCATAGTCTGGATTGCAGTTTTATGTAAAGCAAAAGAATTTTAAGAAGCAAACACCATATATATGACAGCAGCTATTTACATTAG
CGGCTATAATGCAGACCTTCTAAACAAATGGTGTTGCTTCTAAGGCTGGGTGTGCATACTGATGCCATCCTGGGCATATACCCAAAAGGGACAGTCATGC
ATATAGCGATGTCATCCACACGTGCACGCAAAAAATAAGACGTATCACATGGCATATATTCTGGCAGTTTAGGATGCACCATAGAGAAGGAAAGGGGTTG
ATGGAGAGGTGGGCACTTGTCAAGAGGAAAGAGGTGGGTACTTGTATTGTTGTATACAAAATAGTCAAAGCAGGCACATTTCACAGGTGTACCGCATGGA
GTGGAAGAAGCAGCGGATCTGCAAAATATGAGAATATTGATTTTTG