Detailed information on CNT30690531


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 7e-153

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099836Oryza sativaOryza rufipogon53.0447.49100218forward
CNT30574718Oryza sativaOryza barthii53.2851.992.69219forward
CNT30115776Oryza sativaOryza nivara28.9520.0798.32119forward

Expression of CNT30690531

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MPPPPPADPPPGDDASSSSAASAPPAKLEGR*

>peptide 2 (51 aa)
MMRRRRRRRRRRRRSWRAGSGPSRGRAPTTPPSPPTTTTRPSPASSPQRPSL

>peptide 3 (36 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAGRSAARR*

Sequence

>CNT30690531
TTGACGTGAAGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTA
AAAAACAAAAACAGTAGTAGTAGAGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAG
CAAGGAAACGGTAGGGATGCCGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTCGTCGTCGGCGGCGTCGGCGCCGCCGGCGAAGTTG
GAGGGCCGGTAGTGGCCCGTCACGGGGTCGGGCACCCACGACACCTCCCTCGCCGCCGACGACGACGACCCGTCCTTCGCCTGCGTCATCCCCGCAGCGC
CCTTCCCTTCC