Detailed information on CNT30690471


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675085Oryza sativaSetaria viridis20.3112.1698.1153forward
CNT30523073Oryza sativaSetaria italica51.3418.6985.07134forward
CNT30552300Oryza sativaOryza glaberrima89.6635.6299.57234forward
CNT30455220Oryza sativaSaccharum spontaneum50.5717.3586.36132forward
CNT3015172Oryza sativaZea mays22.229.1596.5558forward
CNT30363793Oryza sativaSorghum bicolor50.5727.7984.85132forward
CNT30595494Oryza sativaOryza meridionalis88.5135.3291.77231forward
CNT30369290Oryza sativaOryza glumipatula89.6650.9899.57234forward
CNT3099710Oryza sativaOryza rufipogon90.4237.05100236forward
CNT30574579Oryza sativaOryza barthii89.6649.2699.57234forward
CNT30497518Oryza sativaDigitaria exilis49.8120.9784.62130forward
CNT30115620Oryza sativaOryza nivara75.4836.4894.92197forward
CNT30603545Oryza sativaOryza punctata48.2823.9190.48126forward
CNT30557683Oryza sativaPanicum hallii50.5736.5785.61132forward

Expression of CNT30690471

Peptides detected in this lncRNA

>peptide 1 (70 aa)
VAVVVVVAVVVVVVVAAGAGPVDLLERLLDDVLLLHAAAAEEAAGGGHRPHLLRAVVHLLVVSHCFLVGE*

>peptide 2 (29 aa)
RCRGGSRCRGCGCGGGGRSRTCRSPGTSP*

Sequence

>CNT30690471
CGTTGCCGTGGTGGTAGTCGTTGCCGTGGTTGTGGTTGTGGTGGTGGCGGCCGGAGCCGGACCTGTCGATCTCCTGGAACGTCTCCTTGACGACGTGCTG
CTGCTGCACGCCGCCGCGGCCGAGGAAGCCGCCGGTGGGGGTCACCGACCTCACCTCCTCCGAGCAGTAGTCCACCTCCTGGTAGTGAGCCATTGTTTTT
TAGTTGGGGAGTGAGGTGAGGTGGTGTTGTGATGAGCGAGAAATGGTTAATTAGGGTTTCG