Detailed information on CNT30690462


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30555942Oryza sativaOryza glaberrima44.0735.7499.58238forward
CNT30369360Oryza sativaOryza glumipatula46.8532.8699.6253forward
CNT3099818Oryza sativaOryza rufipogon47.5930.78100257forward
CNT30574577Oryza sativaOryza barthii49.8133.7999.63269forward
CNT30115572Oryza sativaOryza nivara49.8129.3100269forward

Expression of CNT30690462

Peptides detected in this lncRNA

>peptide 1 (46 aa)
MGKVCLLVIDENLFNGILLVAIVVIMFMLLAGGGAPPPRRRGFCVY*

>peptide 2 (33 aa)
MASSSSPSSSSCSCCSPAAARRRRAAAASACTD*

Sequence

>CNT30690462
GACCCAGAAAGAGAGACAGAAAGCATCCATTCTCTCACACACACCTCGATAAGTCGATATAAATAGAGTAAGATGATTAGTGTAGAGAGAGATCATTATT
AGCATTCGATCTGCTTCTTCGCCATCGAAGTAATTAATCAAATCGGAGGAGATCATTAGCAAATTATCAGCTTGGGCTTCATGGGGAAGGTGTGCCTTCT
CGTCATCGACGAGAACCTCTTCAATGGCATCCTCCTCGTCGCCATCGTCGTCATCATGTTCATGCTGCTCGCCGGCGGCGGCGCGCCGCCGCCGCGCCGC
CGCGGCTTCTGCGTGTACTGACTGACCGGCCGGCGAGTGAAACCATGAACAACACTGCAGGTGCAGGTCGAGCTTGATTTCTAAGCTTTTAATTTGTGTT
TTTTTTTTCTCCTTTTTTTTTCTTTTTCTTTTGTCCGTGCGATGAAGCTAGCTCGTGATTTCTTCTTCTTCATGTTTTCGGGAGTAATTAATTAACGTGT
TCTTGTGTAGAAATATATGTGAAGGATTTTCTGTTTGATC