Detailed information on CNT30690449


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30618191Oryza sativaSesamum indicum27.279.4882.93123forward
CNT30552278Oryza sativaOryza glaberrima68.9635.2697.75311forward
CNT30246414Oryza sativaAvena sativa32.5914.6685.03147forward
CNT30661706Oryza sativaTriticum dicoccoides21.2914.8184.3896forward
CNT30347816Oryza sativaEragrostis tef33.047.0889.26149forward
CNT30369486Oryza sativaOryza glumipatula68.9635.1498.07311forward
CNT3099918Oryza sativaOryza rufipogon68.2948.3598.05308forward
CNT30574799Oryza sativaOryza barthii68.967198.07311forward
CNT30117885Oryza sativaOryza nivara10051.4895.34451forward

Expression of CNT30690449

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MIVLIINKSSSFSPATYYKKLLYYYYILHVALTQISVIKMALYHRQVHIVNHQITDKSIQILR*

>peptide 2 (47 aa)
MYTSPYNLISSRSSWGQTWPWRGRRRAPPARRRRAWRRWTACRGAGC*

>peptide 3 (29 aa)
MDCVPGSWLLKAETTAAGLSPVFLWKWTRP

Sequence

>CNT30690449
CAGATAGAATCTTCCTCATCTTCCAGCCAAAATGATTGTACTAATCATTAACAAATCATCATCGTTCTCCCCAGCAACTTATTACAAGAAACTTCTCTAT
TACTACTACATTTTGCATGTCGCTCTTACACAAATAAGTGTCATCAAGATGGCATTATATCATCGACAAGTACATATAGTTAATCATCAAATCACAGACA
AATCAATTCAAATTTTAAGATAAGTTTGAAACCTCAAATCTCTCCAATGTATACGTCGCCTTATAATCTTATATCGTCTAGGTCTTCTTGGGGGCAAACT
TGGCCTTGGCGAGGACGGCGTCGGGCACCGCCGGCGAGGCGGCGAAGAGCGTGGCGGCGATGGACTGCGTGCCGGGGAGCTGGCTGTTGAAGGCGGAGAC
GACGGCGGCGGGCTTGTCGCCGGTGTTCCTCTGGAAGTGGACGAGGCCGCG