Detailed information on CNT30690441


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099806Oryza sativaOryza rufipogon39.01100100369forward
CNT30603588Oryza sativaOryza punctata16.8136.7284.91159forward

Expression of CNT30690441

Peptides detected in this lncRNA

>peptide 1 (78 aa)
MRCESVCCVENHLKIKQRKVKIIFSTPVLIKPLIPCWAQRRAFPYPERKIIGITAFLHFSVLLPPRLVPPKTVTANNS*

>peptide 2 (88 aa)
MNPIIWARRRPTKSRPSRSGGQMRLPGGGVGEADQPMETSVVGVWGFGWARDRLKQQCGYRMAEIITAFCQIGVTNKVAVSVAAGARK*

>peptide 3 (51 aa)
MVCSWVPLQRTTERRVHISTLRCHQRCLQLTHPGRIHLPQSYYALRICLLR*

>peptide 4 (58 aa)
SYLSSSSSPSIKPSLSPPEENEIAELQRLGQLLDMGRRAIVLGPLAHVPSQITQETSD*

>peptide 5 (41 aa)
PIYPLRLPRASSRPSRRLRRTRLQSCSAWANSWIWADAPLC*

>peptide 6 (49 aa)
MSPINSSRPNPPSPILLCAANLSVALKIISRSNNGRSRSSSAPLFSSNH*

Sequence

>CNT30690441
ATCCTATCTATCCTCTTCGTCTTCCCCGAGCATCAAGCCGTCCCTCTCGCCGCCTGAGGAGAACGAGATTGCAGAGCTGCAGCGCCTGGGCCAACTCTTG
GATATGGGCCGACGCGCCATTGTGTTAGGCCCATTAGCCCATGTCCCATCTCAGATAACTCAAGAGACAAGCGACTGAAGTACGGTTAGAGACGGGACTC
GTTCCGCGAGAACTTACGGCGGCGGGCCGGCGGCTCATGAACCCTATAATTTGGGCGCGGCGGCGGCCGACGAAATCGCGGCCGAGCCGGTCGGGCGGTC
AGATGCGGCTGCCGGGCGGCGGTGTCGGGGAGGCGGATCAACCTATGGAAACCTCGGTCGTGGGGGTGTGGGGGTTTGGTTGGGCGCGTGATCGCCTGAA
ACAGCAATGCGGCTATCGGATGGCTGAAATCATAACTGCATTTTGTCAAATTGGCGTGACGAATAAGGTTGCAGTATCAGTTGCAGCAGGGGCAAGAAAG
TGAAATACGGCTCATTTGGCTGTGGCAACGTGGCATTCTCACTGGCTAGCATCATAACAACTGAAGACATCAATGGTCTGTTCTTGGGTTCCACTTCAAC
GCACAACAGAGCGACGTGTACACATCTCAACACTTCGTTGTCATCAAAGATGTCTCCAATTAACTCATCCAGGCCGAATCCACCTTCCCCAATCTTATTA
TGCGCTGCGAATCTGTCTGTTGCGTTGAAAATCATCTCAAGATCAAACAACGGAAGGTCAAGATCATCTTCAGCACCCCTGTTCTCATCAAACCATTGAT
CCCTTGCTGGGCTCAACGCAGGGCTTTTCCTTACCCTGAACGGAAGATCATCGGCATCACTGCTTTTCTCCATTTCAGTGTGCTGCTTCCTCCTCGCCTT
GTTCCTCCAAAAACAGTAACAGCCAACAACTCCTAAAATGCCACAG