« Back to Oryza sativa search


Detailed information on CNT30690414


BLAST search results

BLAST vs Swiss-Prot:
sp|O22914|CP121_ARATH, E-value = 6e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099591Oryza sativaOryza rufipogon35.3237.77100190forward

Expression of CNT30690414

Peptides detected in this lncRNA

>peptide 1 (39 aa)
CKKPFFSHFPLELSVNTTIPPNSPLSSTTNNLFNPVTYN*

>peptide 2 (65 aa)
MLSDILSEMSGGVAGPLALTAANPPRPTRGNTTRPAPATGLTRDDAAAAGVDRPTLVSVDAMAGC*

Sequence

>CNT30690414
TGTAAAAAACCTTTTTTTTCCCATTTCCCCCTTGAACTATCCGTAAATACCACCATTCCACCAAACTCCCCTCTGTCTTCTACGACAAATAATCTTTTCA
ACCCAGTAACTTATAATTAATTACAGAGAGATTAGCAAACATATAATGGTAAGAATCAGTTGTCGTAGGTGCGGCACTCGTCGGTCTCCTTGAGCTTGTC
GCGCGCGTGGCTCGCCGCCGCGCTCAGCTCCTCCACCTCGTCCCACGCCGCCGCGCACTCGCCGCTCGCCGTGTCCTCCGCGCACGCCTCCTTCGCCTTG
TCGATGCTCTCCGACATCTTGTCCGAGATGTCCGGCGGCGTCGCCGGCCCGCTCGCCCTCACCGCCGCGAACCCGCCGCGGCCAACACGGGGAAACACCA
CGCGTCCAGCTCCGGCGACCGGCCTAACGAGGGACGACGCCGCCGCCGCCGGGGTAGACAGGCCGACGTTGGTCAGCGTGGACGCCATGGCTGGCTGTTG
ATGCGGATTTCTGCGTGTGATGTGGGCGTTTGTAGCTG