CANTATAdb - search

Detailed information on CNT30690402

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552477	Oryza sativa	Oryza glaberrima	71.03	89.67	99.54	434	forward
CNT30369416	Oryza sativa	Oryza glumipatula	65.96	100	98.76	403	forward
CNT30107444	Oryza sativa	Oryza longistaminata	67.76	40.51	98.55	414	forward
CNT3099888	Oryza sativa	Oryza rufipogon	98.85	74.11	100	604	forward
CNT30574818	Oryza sativa	Oryza barthii	77.41	65.6	99.58	473	forward
CNT30115661	Oryza sativa	Oryza nivara	67.59	83.94	94.19	413	forward

Expression of CNT30690402

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MSKSIKTSIYMLRNIINIMDEQASNQSQTK*

Sequence

>CNT30690402
AAAATCTCTTCATATAGAACTATATGTCAAAATCTATCAAAACAAGCATCTATATGCTTCGCAATATCATCAACATAATGGATGAGCAAGCAAGCAATCA
ATCTCAAACCAAATGAATGCCTCAACAAGCGATCAAACCTCATCTAGTGTGTAAAGCGCCCAAGGGAACTCCAGTTTAGGACAATGCAGGCAAGAAGACC
TGAAGATTGACTGCCCGTTGCTAAAAAGGAAAAAGTAACATAAAACACTGACAAGTGAAGAGCCAGGCAGAACACATTTTGATCAATATCCAAACGGCAG
CTTCTCACATAAATAAGATAACCGATAGCTCCAGGTTGAGAATCAAAAACCGAAAGAAATAGGTTCTTTGAGCAGAGTGCAGAACATAAACAAAAATGCC
TGTTGCAAATTGCAAGACTACAGGTAAACTTAAATGCCATATGGAGTTTGTTTGGCAGCATAAGATGAAACTACTGTGATAAGGCTACTCTCTCACTCGT
CATCCTCTTCCTCGTCATCATCATCAGCACCAGCGGAGGAGTTGAGAGCATTCAATCTTTCGACGAGACTGGCCTTCCTCTGCTCGTAGGTCAGCTTCTT
GAGGTTGTATC