« Back to Oryza sativa search


Detailed information on CNT30690397


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595620Oryza sativaOryza meridionalis36.9353.4297.95195forward
CNT3099736Oryza sativaOryza rufipogon35.9828.44100190forward
CNT30603476Oryza sativaOryza punctata23.8614.3595.24126forward

Expression of CNT30690397

Peptides detected in this lncRNA

>peptide 1 (29 aa)
RIYTYVVASIYLVVRTYAWIINNLGVINN*

>peptide 2 (98 aa)
MAALLPHQVLLRVHGVVPPPTVDLAALAVVVVGVGLHPHATMPVPVPVTVAVPVAVLPAGGLVALVHGAGVVLRHCWSVSLLQLATSPIRWWCKGSSLL

Sequence

>CNT30690397
CGTATATATACGTACGTAGTAGCCAGTATTTATTTAGTGGTACGTACGTACGCATGGATTATTAATAATTTGGGGGTGATTAATAATTAATCAGTTGCAG
TAGTAGCCCTGCTGCTGCGGCATCCTGGCGTAGCCGTACTGCTGCTCCTTGGCGCCGTAGCTGGCCTGCTTCTGCTCGCGGTGCTCGTGGTAGTACTCCT
GCTGCTGGCCGCCGCCGTAGCCGTAGCCGCCATGGCCGCTCTGCTGCCTCATCAGGTACTCCTGCGAGTGCATGGAGTTGTTCCTCCTCCCACGGTCGAT
CTCGCCGCCCTCGCTGTAGTAGTCGTCGGTGTGGGACTCCACCCTCATGCCACCATGCCCGTGCCCGTGCCCGTGACCGTGGCCGTGCCCGTGGCCGTGC
TGCCTGCCGGTGGTCTCGTAGCACTCGTCCACGGTGCTGGAGTAGTACTCCGTCATTGTTGGTCGGTTTCTCTCCTGCAGCTAGCTACTTCTCCGATCAG
GTGGTGGTGCAAGGGAAGTTCTTTGCTT