« Back to Oryza sativa search


Detailed information on CNT30690387


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30632917Oryza sativaCapsicum annuum12.3920.9481200forward
CNT30626147Oryza sativaDaucus carota9.9860.380.75161forward
CNT3099770Oryza sativaOryza rufipogon12.8352.67100207forward
CNT30113527Oryza sativaFicus carica4.0321.6786.1565forward

Expression of CNT30690387

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MEQRCTECLLPVLQEQLLRRSSLREHMPCSSKPNVVRK*

>peptide 2 (67 aa)
MTTGRPEMITTAHLAVEHTVRIVSVPGSRMVSSGSSPVVSAYVRSPTTTIANEKSLFFMKLSSGFSE*

>peptide 3 (50 aa)
MFISDRVVLIDSIMSSTITNKVLSTSSNFIPQYKELPWYDLLGYLLVDQV*

Sequence

>CNT30690387
CCAAAACCAAAAGGGAAGAGTGGATCATAGTGTAGGTCACCAACATTCATGGGCAGCTGGTCAACAGACTTGAACCAAGTGCGTGGGAGCTTCCCGGTGA
AGCCATAGTCCCCAAACAGTACATCCGCAACACCCTGACCTTCTGTTCCAGGAAGCCAAGCTGCGACGAGCGCTTCCATCATTGGAAGATATGGTTCAAT
GACAACAGGCCGACCAGAGATGATAACCACTGCACACTTAGCTGTGGAACACACTGTTCGGATTGTGTCTGTACCAGGGTCTAGGATGGTGAGTTCTGGG
TCATCACCTGTTGTTTCAGCATATGTTCGCTCACCAACAACAACAATAGCGAATGAGAAGTCATTGTTTTTCATGAAGCTTTCATCAGGGTTCTCAGAGT
AGACAACATGTGTTGAATCAGCGACAGTGGACTTTATGGCCTCAAGAATTGTTTAATATCTCCACTACCTCCGATCCATTCAATTGACCACCCGCCACAT
TGGTAGCCCAAATTGCTAGCATGGCTTCCAGCTACAAGGATACTTCTAGCTTTCTTTGGTAGAGGCAGGAATTGTTGATTGGGAGAGTTGCCGTTTTTTA
ATAGAACAAGTGATTTCCTGACGGCTTCTCTAGCCAAATCTCTGTGCTCCTGTTAAATTACTGATCTGCGAAGCTAAGATCAGCTAAAGGGTTCTCGAAT
AGGCCCATTATAAATTTGACTCGAAGGATACGCCTGACAGCATCATCAATTCTGCTCATATTGATAATACCCTTCTTAACAAGAGATGTCACATCATCAA
TGTATTGGGTGTAATTGAATGGCACCATGACCTGTTATGGAGATGAAATGATCTTGCACAGAGTAAGTATAATTTGCATCAGGTGGTGACGTTATCCTGT
CTATTCCTAGCCAATCTGATATCACAAATCCCTGCGATCAGAGAGCATGAAGAGTAGCCAGTAACCAGATCATGATTGGCATGCATTTTGACACCATTCA
AGCTTGAATAGGAAACCATAACAGTAGCAACACCCTTTATAATAGAGTCATAATATGGGGGCATGTGAATGCCTAGAAGCCCATGTTCATCAGTGATCGT
GTTGTTCTCATTGATTCCATTATGAGTTCCACCATCACCAACAAAGTGCTTAGCACAAGCAGCAACTTTATCCCTCAATATAAGGAACTCCCTTGGTATG
ATTTATTGGGATATCTCCTTGTAGACCAAGTATAATGTCTGTCATCTGCTGGACTACCCTGTGGTCTTCACTGTAGCTCTCATAACATCGGCCCCATCCG
TGCGTGTGCTTACTGCAATACATGGAGCAAAGGTGTACGGAATGCCTGTTGCCCGTACTTCAAGAGCAGTTGCTTCGCCGATCCTCCTTACGAGAACACA
TGCCTTGTAGCTCCAAGCCCAATGTTGTGAGGAAATAGGGTGGCATTGTAGACATTGTTATTACCATGAACTGCATCAATGCCGTAGATCATAGGTATTC
CTAGACGTGTTGACAAGGCGCCTTTCTGGAATTCATTTACCATGTTCACCCAAACTGCAGGAGTAGCCTGGGGAGCAGGGACACTTCCACCACCACTCAA
TACACTACCTAGAA