Detailed information on CNT30690383


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672671Oryza sativaSetaria viridis14.0323.2190.4394forward
CNT30520803Oryza sativaSetaria italica14.0321.2291.4994forward
CNT30286278Oryza sativaTriticum aestivum12.6929.1189.4185forward
CNT30241870Oryza sativaAvena sativa12.3920.8589.1683forward
CNT30655558Oryza sativaTriticum dicoccoides12.6922.3789.4185forward
CNT3015104Oryza sativaZea mays12.8426.0689.5386forward
CNT30595633Oryza sativaOryza meridionalis44.0390.7798.31295forward
CNT3099912Oryza sativaOryza rufipogon95.9757.3199.69643forward
CNT30115817Oryza sativaOryza nivara58.9679.899.49395forward

Expression of CNT30690383

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MATAPCPIYSHPHYTHGSSVVNAMHTPARERSM*

>peptide 2 (32 aa)
KTKKMYINKILRLSKEFYLGARRQHDIHETLR*

>peptide 3 (30 aa)
MELLSCWPEEQWQPHPALFIATHTTPTDHQ*

Sequence

>CNT30690383
TAAGACAAAGAAAATGTATATAAATAAGATTTTGCGATTAAGTAAGGAATTTTATTTAGGGGCCAGGCGGCAACATGACATACATGAGACGCTAAGGTAG
GTAGCTAGCTAGCTAGCAGCAAATTAAGGACTTGCATGCAAGCTAGGTAGCTAGTACATGGCATATGTAGTGGTACTGGTAGCTCGTTGATCAGGTGATG
AATTGGATGGAGATAAGTTTCTTCTAGTTGCAGTTGCAGCAGGAGCAGCCGCAGCTGGTGCCGCACTTGCAGCTGGAGCCGCATCCGCAGTTGCCACCGC
AGCACGACATGGTGATGATGATGAGAGCTTCTTCTTCCTTCTCTGGCCTTGTCGGCAACTAGCTGCTGCTTACTTGTATGGAGCTTCTCAGTTGCTGGCC
TGAGGAGCAATGGCAACCGCACCCTGCCCTATTTATAGCCACCCACACTACACCCACGGATCATCAGTAGTGAATGCAATGCATACGCCCGCGCGAGAGA
GATCGATGTAGGAGTAGCAAGCATCTAACTGCAGTTGCAGAATAATCAACAGTAGTAAAAAGAAGAAAAAACAATACTCAGTAGTAGCTAGATCGACCAC
TAGAATGGATGGGATTGGAGATGCCGCGCGCACTAGATAGCGATAGCAGCTGCCATGGAATGGAAATAAG