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Detailed information on CNT30690379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006895, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30597095Oryza sativaOryza meridionalis3469.8791.54473forward
CNT30103007Oryza sativaOryza rufipogon67.4356.8193.07938forward
CNT30117531Oryza sativaOryza nivara59.5378.3392.75828forward
CNT30550983Oryza sativaOryza brachyantha18.1977.6185.77253forward

Expression of CNT30690379

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MSRRPVFYLGSGIRGSLQAGGGGVGDGTRTVDQVRTAAATGDALVATRSSL*

>peptide 2 (33 aa)
MYYAGGLWAYICWIAIVGLVEYHSYSSPIYYSL*

>peptide 3 (39 aa)
MVVGVQLYIFIIVRLNNNCYMAFKCCSDRINHMTWNGIG*

>peptide 4 (36 aa)
MNMHKIPCWIMVALDIYVLCRWIMGIYLLDCYSWTC*

>peptide 5 (29 aa)
MALSCGLKDFRESCERGLVMRVVVVVESD*

Sequence

>CNT30690379
GTTTCTTTCAGTTGGGCGTTTATATCGGATTTCTTGGAATTCTTCATTGATTTATTCATGAGAGAATCTATTCTATACAACTAAGTTTGTTATAGTTCAA
CAATTTTGGGTATCGCAAGCAAGTCCAACACCTTTGACCAACTCTTGTTATATTTTCGTAATTGCAATCTATATGTATCACCTAGCATTAAATTATACTT
TCTATAATTAAAATAAATATGCTGATGGATTGGATTGGCTGGTGGAGCAGTCGGTCATATATAGGTGTATTCTGAACTTGCCATGGTTGTCGGGGTTCAG
CTGTATATATTTATCATCGTAAGGTTAAATAACAATTGTTATATGGCATTCAAGTGCTGTAGCGATCGTATCAACCACATGACCTGGAATGGGATAGGCT
AGCTTAGTAGTTCTTTCTTAATGGCTTTATCCTGCGGGCTTAAGGACTTCCGCGAATCCTGTGAGCGTGGCCTAGTGATGAGGGTTGTTGTTGTTGTGGA
ATCCGATTAGATGATGTGGATCACCATTGTTGCGGGATCCAATGATTCGCCGTTGTTGCGGGAATCACCCGCAGAGATAATTGATAGATGGGATTGATGA
AAAGCTTATGACCTTAGCCTTGCCGGCATACACCATAAAGTGTGCTTCAAGCACCAACGGGCGTGGGCATTAAAAGGTTTAAGGCGTCTGTGGGTACAGA
GACACACCTCTGCAGAGTGTATGAAGTGTGATATGTCACTCCCTGTTTTGGGTAGAAACCGCGAATGCGGTAGGAAAGGAACCTATCGGAGGTTCTAATA
CCTTTGGTGCCTTATATGCAGTAGATTTTATAATTACTTAATATGAGTTTTTACAACACTGTTTTATGAACATGCATAAAATTCCTTGTTGGATTATGGT
GGCTTTGGACATATATGTATTATGCAGGTGGATTATGGGCATATATTTGTTGGATTGCTATAGTTGGACTTGTTGAGTACCATTCGTACTCATCCCCTAT
ATATTATTCCTTGTAGTGTTGAGCTAACAATTAGGTGACGAGAAGATTCTGCAAAAATTGATCAAGTGTTGCATATCTCTACATCAACTAAATGATGAAG
GTGATGATGATATAGAAGAGCAAGGTCTTGGTAAGTTGATTCTTACTAAGGAATGAGCCGTAGACCGGTATTCTACCTCGGAAGTGGAATACGAGGGTCG
CTACAGGCTGGCGGTGGCGGAGTCGGAGACGGCACGAGGACGGTGGATCAAGTGCGCACTGCGGCGGCCACAGGCGACGCGCTGGTCGCGACACGGTCCT
CGCTTTGAGCTGAGGACGCTGGGGAGGCCCTGTCAATAAAAACACAAAGGGGTGCTGATTGAACACAGAATAAAATCAGAAGTTATAACTC