Detailed information on CNT30690372


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT006186, E-value = 1e-51

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552312Oryza sativaOryza glaberrima28.5510.9794.69245reverse complement
CNT30596973Oryza sativaOryza meridionalis28.5510.393.88245reverse complement
CNT30105184Oryza sativaOryza longistaminata28.557.490.61245reverse complement
CNT3099578Oryza sativaOryza rufipogon28.918.1786.69248forward

Expression of CNT30690372

Peptides detected in this lncRNA

>peptide 1 (84 aa)
AGRLRHHADDKLVLDCNAEGALFAEAFLPTLTAADFLRAGATAKPHKSWRKLLYRVHAATFVAVPPLVVQTVQYIDRTSACWLS*

>peptide 2 (94 aa)
MVPPVIYTVCLGVRAAAGYRSVARCSSLSSFISLKYVYSWLIACYCTCSNNNNNNNNNKGRSTTSCPLIDLCLMMMMSLSAFFCCSYPTTLVGD*

>peptide 3 (82 aa)
PEGSGTTPTISLCSTAMPRARSSPRPSCPPSPPPTSSVPVPPPSRTSPGGSCSTESTPPPSSPSRRSSSRQYSTSIELVRAG*

Sequence

>CNT30690372
GCCGGAAGGCTCAGGCACCACGCCGACGATAAGCTTGTGCTCGACTGCAATGCCGAGGGCGCGCTCTTCGCCGAGGCCTTCCTGCCCACCCTCACCGCCG
CCGACTTCCTCCGTGCCGGTGCCACCGCCAAGCCGCACAAGTCCTGGAGGAAGCTGCTCTACAGAGTCCACGCCGCCACCTTCGTCGCCGTCCCGCCGCT
CGTCGTCCAGACAGTACAGTACATCGATCGAACTAGTGCGTGCTGGTTGAGCTAGCTAGCATTGATATTCATCATCGCCGGCCCGCCCTATTGTACGTAG
TACGATCGATACTCTACTATGTGGAGATAAGGGAGTAATTAAGGATAATTATTGATGGTATGATAATCTATAGTAGTATTAATTAAGCACCCCCACCCAA
TTGGTCCATAAGAGCAAGTCTAATAGTACAGCCCACTACCAGCTCCAATTCATCTGTAGCCAATCTAATAGTCAATTCATACAATAGTTGCTTACTATAC
TATTAGTATATGGTCCCACCTGTCATATACACAGTGTGTCTTGGAGTACGTGCTGCAGCTGGCTATAGATCTGTAGCCCGCTGCTCTTCTCTCTCATCGT
TTATATCATTAAAATATGTTTATAGCTGGCTAATAGCCTGCTATTGTACCTGCTCTAATAATAATAATAATAATAATAATAATAAAGGAAGAAGCACTAC
TTCTTGCCCCCTGATCGACCTGTGTTTGATGATGATGATGAGCTTGTCTGCTTTTTTCTGCTGCTCCTATCCTACTACACTAGTTGGTGATTAAAGTGGA
GCTTCCTCTTAACTCCTGAGAGGACTAATGGAGATGGAACCAGGGTTTACCTTACCGC