Detailed information on CNT30690361


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 2e-106

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30352211Oryza sativaEragrostis tef12.0538.1882.85239forward

Expression of CNT30690361

Peptides detected in this lncRNA

>peptide 1 (94 aa)
FLLGDGSQLQLGGQIQRLHCRDVVIVTEEWPRRNLQTINTTFKHLYHLAHHRSVTRPHLDAPQSNDAELLLQLMHVGGSGDLTCFLSGQLTVHS*

>peptide 2 (43 aa)
MACDCNDVCVAIPHWAEHLLHSEELLNCIDCDPCFPVFVGKEG*

>peptide 3 (38 aa)
MVETSLMNSSPLQLELPFSILTATWILPGSNTPLYTVP*

>peptide 4 (66 aa)
MAGAQASDGFVPDIPRYLLGTIHKCSPPICKRGQFNYLDSVTGRGHGYALVWRLMLPPRKRAAAVM*

>peptide 5 (54 aa)
MDNASHVVCCIVDANCGLGVAANQLVRFIAAIRWIAVPAERRGNVLEMAPGEGRT

>peptide 6 (33 aa)
MLQDNAMVKTEIKLRRNSNGKPFPHVFQDISIA*

>peptide 7 (31 aa)
LSPRRWQPAPARRTDTATPLPGCSHRHRRMA*

>peptide 8 (37 aa)
MDSMPGLNSLHSDQHSFFLRPSPIVASRSCKRRTCLI*

>peptide 9 (33 aa)
MRRCTCQENPEACTRRQALFSFLQSRTLPGAPH*

>peptide 10 (31 aa)
MPNAISFSLSLEKLLSDEKMYLSREPRGMYS*

>peptide 11 (30 aa)
MHHNPTMQSFFSNSCMSAAAVISPVSCRVS*

Sequence

>CNT30690361
TCTTTCTCCTCGGAGATGGCAGCCAGCTCCAGCTCGGAGGACAGATACAGCGACTCCATTGCCGGGATGTAGTCATCGTCACAGAAGAATGGCCTAGGAG
GAATTTGCAAACAATCAACACCACCTTCAAGCATCTCTATCACCTCGCTCATCATCGGTCGGTCACAAGACCTCATCTGGATGCACCACAATCCAACGAT
GCAGAGCTTCTTCTCCAACTCATGCATGTCGGCGGCAGCGGTGATCTCACCTGTTTCTTGTCGGGTCAGCTGACGGTACACTCGTGATGGATAGTATGCC
TGGCTTGAATTCTCTGCATTCGGATCAGCATTCCTTCTTCCTCCGGCCATCTCCAATAGTAGCATCCCGAAGCTGTAAACGTCGGACTTGCTTGATATAA
CACCAAAGCTCCGAGAGATCATCTCAGGGGCAATGTAACCTACTGTTCCTCGTGCAGCGCTCACCGGCACAAAGCTCTTGTCCCTTGGGTATAGCCTTGC
GAGACCAAAATCTGCAACTTTTGGAACAAAGTTCTTGTCTAGAAGGATGTTGTGTGGCTTGATGTCAAAGTGTAGAATCTGCAGATCACACCCCTGATGC
AGGTAGTTGATTCCTCTGGCTATGCCCAACGCGATTTCATTTAGCTTATCCCTGGAGAAACTCTTGTCGGATGAGAAGATGTACTTGTCAAGAGAACCCC
GAGGCATGTACTCGTAGACAAGCGCTCTTCTCATTTCTTCAGAGCAGAACCCTACCAGGCGCACCACATTGACATGGTGGATCCGGCCAATGGTAGAGAC
CTCACTGATGAACTCTTCTCCGTTGCAGTTGGAGTTGCCATTTAGCATCTTGACGGCAACATGGATATTGCCCGGGAGCAATACGCCTTTATACACAGTC
CCATAGCTTCCTTGGCCTAGCCTGTCTCTGAAATGGCTTGTGATTGCAATGATGTCTGTGTAGCCATACCTCATTGGGCTGAGCATCTCTTGCATTCGGA
GGAACTTCTCAACTGCATCGATTGTGATCCTTGCTTTCCAGTATTTGTGGGAAAGGAAGGTTAATACAACAAGCGGCGCCAACAGGAACCTGCATAGTAC
TACATAAAAACAAGTTTGTAGGGTTGTTTAGGATTGGTTTAACCTTTGAATATAATAGGATCCTGAAGTACCTGCAATCCAAGTCAGAATGGACATGGCT
GGTCCTGTTCCGTAAATTGCAAACTCGTATGCAACACGAGGCAATTTAACTGGAGCCATTATGCACTGCCAGAAAGGCCCATACGCTAAAAGGATTGCTA
GAAGTCGATTTTTGATGTATATATCAGACGATGGCACCATTGTTTGACGAAATATGCTGCAGGACAATGCCATGGTGAAAACGGAAATAAAATTAAGAAG
AAATTCCAATGGCAAACCCTTTCCTCATGTATTTCAGGACATCAGCATAGCTTAAGCTTGCATTGATAGACGCTCCCCTGTCATCCAGAGGTGTCATGCC
CAGGTACCCACAAGAAGGCTCTAGGCTCTCAACATAAACAGTTTCTGACTCCGAGCCAGTCAGCACGTAGACGAAGGAATGGCTGGTGCTCAGGCAAGCG
ACGGGTTTGTACCTGACATTCCTCGTTATCTCCTTGGAACAATTCACAAATGCAGCCCACCTATTTGTAAAAGGGGCCAGTTCAATTACTTGGACTCCGT
CACTGGTAGGGGCCATGGATATGCGCTCGTGTGGAGGTTGATGCTGCCGCCGCGGAAGAGGGCAGCTGCTGTTATGTGAATTCAGCAAGTCTGTGTCAAC
GACGACGAAAAGGCTCCAATGGATAATGCGAGTCACGTAGTATGTTGCATTGTTGATGCGAATTGTGGCCTTGGTGTCGCTGCAAACCAGCTCGTGAGAT
TTATAGCCGCAATCAGGTGGATCGCCGTGCCGGCGGAACGGAGGGGAAACGTTCTTGAGATGGCCCCAGGAGAAGGGAGGACA