« Back to Oryza sativa search


Detailed information on CNT30690346


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004213, E-value = 4e-168

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30106410Oryza sativaOryza longistaminata87.8664.8994.71586forward
CNT30116420Oryza sativaOryza nivara55.9222.3695.98373forward

Expression of CNT30690346

Peptides detected in this lncRNA

>peptide 1 (83 aa)
MKPQPACYPNSIPTIYPSTTHSLCMKYEPICYPISASTREQLNPSHSSTKAQPRPMLATYPLNQLDYSVYPLFSKKPKTTHKI*

Sequence

>CNT30690346
GCTATCTGTTGACACCGGCTAGAGAAGATACCAATTCTAGTCGTTATACTGCCCAACTCTAGCAACGACTAGCAAACACCCAAATCCCAGCCGATATTCA
TCCTACCTCGATATCGGCTGCTTAATCAAATGAAACCCCAGCCAGCCTGCTATCCAAACTCCATACCAACCATTTACCCTTCTACTACCCATAGCCTATG
CATGAAATACGAGCCGATATGCTATCCTATTTCAGCATCGACTCGAGAACAACTAAATCCTAGCCATTCTTCTACCAAAGCCCAACCTCGACCAATGCTA
GCCACATATCCACTTAACCAGTTAGATTATTCGGTATATCCCCTATTCTCCAAGAAACCAAAAACCACACATAAAATATAAGTGACAATTGTTACTTAAT
CCCCTCTAGCCTCCAACCCTTCAGAACCTACACATATTAGCCCAGTAATCCCTACACCTTATAAAGGAGATAGGTTATACCCTAAACCCTAGCCCTTTTA
GTTGTTTATCGTTTTCTTGTTATTTTATGGATTTTATTGAAATTGGTTCTTCCTCTTTCTTAGTAGAGTCTATTTTGGATGGCAGCCTGTGATATTTCGA
GAATCGGATAATCAGGTTGCCTATCTCGGATTTATTTGCGTTGGAGCAAGGCAAGTTATTATTCCTC