Detailed information on CNT30690298


BLAST search results

BLAST vs Swiss-Prot:
sp|P12940|IBB_HORVU, E-value = 3e-23

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30106957Oryza sativaOryza longistaminata43.6468.2394.61408forward

Expression of CNT30690298

Peptides detected in this lncRNA

>peptide 1 (84 aa)
MAAACTRGPGRRPLDVVAALPRPLHRQPIQRRRALGAGVHRREPVTADEGAAVEVAAGRLHALLAGGGALLHLVVAAVQWRVDH*

>peptide 2 (67 aa)
MLSQHFHGLSIDSPSSAAVHLGPGSTVENQSLQTKAPPLKSPPGASTHSLQAAAHCFTSSLQRYSGG*

>peptide 3 (67 aa)
MSSRYIARSYLLFMILRQLNMGACLRCIYILFSLLVHTSEQGQIKHTHTHGAHKLTKHARCTKAAEH*

>peptide 4 (34 aa)
MQRQVGGFILLQKALSQHFPHGRGVHKGPGSAAA*

Sequence

>CNT30690298
TCTCAGTTTACTAGACTGGTGCCCATGTGATGTGACAGGATCACGTTTCTGATCATTTTATATGTCGAGTAGATATATCGCTCGCTCATATCTCTTATTT
ATGATATTGAGACAACTCAACATGGGTGCATGCTTGCGTTGCATATATATTTTATTTTCCCTCTTGGTCCACACAAGCGAACAGGGACAAATTAAACACA
CCCACACACATGGAGCACACAAACTAACAAAGCATGCAAGATGCACAAAAGCTGCAGAGCACTGAAAAATCTGGATGGAGCTAAGCTCTAGCCTCTAGCT
ATACCAACTCTGAATGATCGAACGAACGATCAGCTAGCTGCAAGCTAGGGCGAGTTTTATTGATGGACACACAGATCGATCATCGATCATCTGTAGCTAG
CTAGTTCTCCGCTCGGGGTTTGCACATGGGCCCGGGCTGGCCGGTGAAGCGGTCCTTGCAGACGTAGCGAGGCGGCTCTGACGACTCCACACGCTGGCAA
TCCTTGCACGCGGCGGCGCACTTGTTCACCTCGTCCATGCAGCGGCAGGTCGGCGGGTTCATCTTGTTGCAGAAGGCCTTGTCGCAGCATTTCCCCCATG
GCCGCGGCGTGCACAAGGGGCCCGGGTCGGCGGCCGCTTGATGTTGTCGCAGCACTTCCACGGCCTCTCCATCGACAGCCCATCCAGCGCCGCCGTGCAC
TTGGGGCCGGGGTCCACCGTCGAGAACCAGTCACTGCAGACGAAGGCGCCGCCGTTGAAGTCGCCGCCGGGCGCCTCCACGCACTCCTTGCAGGCGGCGG
CGCACTGCTTCACCTCGTCGTTGCAGCGGTACAGTGGCGGGTAGATCATTAGCCGGGAGATCTCGATGTTGTCGCAGCAGTCCCATGGTTTGGCGGCGCG
TGGTCGTGATGCTTTGGCGCCGTCGCTGGGGAGAC