Detailed information on CNT30690292


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30339348Oryza sativaEragrostis tef3312.7182.21163forward
CNT3099839Oryza sativaOryza rufipogon78.9596.3100390forward
CNT30574954Oryza sativaOryza barthii68.2210096.44337forward
CNT30115665Oryza sativaOryza nivara70.0496.9299.42346forward

Expression of CNT30690292

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MNRLFSPCSVGIRREWKNVDRCVTTELERNRRAAASTSEAPSCTSSESAHACPPATTGRSRRRTGSRRCHRPPGTRTAW*

>peptide 2 (31 aa)
STQVAQGEGGDLERKGAWGSGRWGRHNGMRS*

>peptide 3 (31 aa)
MLGVPPRMDTEPRYPRWWSVILATDTLLRPSS

Sequence

>CNT30690292
TCGACACAAGTCGCACAAGGGGAGGGGGGAGACCTGGAGAGGAAGGGGGCGTGGGGTAGCGGCAGGTGGGGAAGGCATAACGGGATGAGGAGCTAGAGCG
AACCGAAAAAGGGTGAAGCGAAGCGAAGCGGCGAGGTTTGTCCGGCCGTGATGGACCGATGAACAGACTCTTCTCTCCTTGTTCTGTTGGAATAAGACGC
GAATGGAAGAACGTTGATCGATGTGTTACTACGGAATTGGAGCGAAATAGGCGTGCAGCGGCCAGTACAAGCGAAGCTCCATCTTGTACGTCGTCCGAGT
CCGCCCACGCGTGTCCACCGGCGACGACCGGACGTAGCCGACGGCGTACAGGAAGTCGCCGGTGCCACCGACCACCGGGTACACGGACGGCCTGGTGATG
TTGGGCGTGCCCCCGAGGATGGACACGGAGCCCCGGTATCCGCGGTGGTGGAGCGTGATCTTGGCCACCGACACGCTCCTCCGGCCGTCCTCGC