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Detailed information on CNT30690246


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004359, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595467Oryza sativaOryza meridionalis62.0450.1992.42528forward

Expression of CNT30690246

Peptides detected in this lncRNA

>peptide 1 (30 aa)
PSSSPPVAVAIVDSASSGEPLSDSSRIHHP*

>peptide 2 (36 aa)
RLLHLRSPSPLSIPPPPVSHCPILRVYTIPRTSLTP*

>peptide 3 (44 aa)
MHVNSMSGSSRCRLPGALHRRRTIFFTAAAVQTFPRLVQGSMIA*

>peptide 4 (54 aa)
MKTHACQFDEWIEPLPSSRSSAPSPDHILHRCRCPDFPAPRSRFDDCLNGEEMI*

Sequence

>CNT30690246
CCGTCTTCTTCACCTCCGGTCGCCGTCGCCATTGTCGATTCCGCCTCCTCCGGTGAGCCATTGTCCGATTCTTCGCGTATACACCATCCCTAGGACCTCA
CTAACCCCATGAAAACACATGCATGTCAATTCGATGAGTGGATCGAGCCGTTGCCGTCTTCCCGGAGCTCTGCACCGTCGCCGGACCATATTCTTCACCG
CTGCCGCTGTCCAGACTTTCCCGCGCCTCGTTCAAGGTTCGATGATTGCTTAAACGGTGAAGAAATGATTTAGGCGCTGACATTTTCTTGATTCAAGGTT
TTAGACTTAGTCTTTGAGTGATGCGGGTAATCGACGGCTTCTTCTAGGACTTGAACTTAATGGGGTAAACCCCTAGTCGGTGTGCTTGTGGATTGGGTAG
ACAGGCTTCCGTTGTTCTATTATTTATTTGGCCGGTCGGCCAATGTAACTAAAGTAGATGTAGTTTATAATCGCTTTCATCTTATTTGTGTTTGCTATGT
ATAATCATGCTTGAGATGAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATGAGTTAAGAATATTTGAGATGTTGAAGATCTTTA
GCCATTTTTGTCAAGTCTCCTGAATATGTAACACATCTGGTCACCGCCTTCGAGTTGTTTGACGGGCACATCTCAGGCTGAAGTTGACTGGCAGGCTAAA
GGCCCAGCAATGTCTCCAATATTCCTCCCTCGAGGCGTCGGATATTTCATTATGCTTGTTTGATGACTTGAATTATTCATTTCATCTCTCAAATATAATG
GAAGGTTCGGAGAGCCTACGACATTAGCCAAATATATATGTATACCATAAA