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Detailed information on CNT30690233


BLAST search results

BLAST vs Swiss-Prot:
sp|P12940|IBB_HORVU, E-value = 3e-19

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574900Oryza sativaOryza barthii84.1664.5196.24558forward

Expression of CNT30690233

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MLHICHCYSAASKALTLIERSARAPLLDASLLFTVGSYDLRLINMSS*

>peptide 2 (34 aa)
MSLLLGSKQGVNADRAVSACAPARRVALIHRWIV*

Sequence

>CNT30690233
TCACGATCCAGATAAAACAAACACAATAAAGAAAAAAAACACAATAAAGGAAAAAAAACATACGTGACCACACGAATGTTACACATATGTCACTGCTACT
CGGCAGCAAGCAAGGCGTTAACGCTGATCGAGCGGTCAGCGCGTGCGCCCCTGCTCGACGCGTCGCTCTTATTCACCGTTGGATCGTATGATCTGAGGCT
AATTAACATGAGTAGCTAATTAAGCTGGCTGGTTGTGACACTTGGGCCCCGGGAAGCCGTGGTAGCGATCGAGGCAGCGGAAGCGCGGCGGCTGCGACTC
CACCTGCACGCACTTGCCGCAGCCGCCGGAGCACGACTTCACCTTGTCCTGGCAGCTGCACGTCGGCGGCATCGACCTTGTGCACACGGCGTCGTCGCAG
CATTTCCACGGCCTCGACCTCACCGCCTCCTCGCCGCCGCCGCCGGTGCACTTGGGCCCGGGGTTGACGCCCCAGCGGCGGCGCAGTGGTCGACCTCGTC
CAGGCACTTGTACTTGGGCGGCCAGATCCTGAGCGGCGACTGCTTCAGCTTGTCGCAGCAGTCCCACGGCGGTGACGGCCATTCGTCGCCGCCGTCGGTG
GGGAGGCGGATGTTGCTGCTGCCGCTCTTCATGGCTGATCGTTTTTTGTTCTTTAAGAAGTTG