Detailed information on CNT30690231


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574736Oryza sativaOryza barthii95.8810099.551116forward
CNT30115666Oryza sativaOryza nivara9.9721.2593.97116forward

Expression of CNT30690231

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MINRSNSRIRRTRHRCFSIARQAAGSITTAPVQARMPTMMQP*

>peptide 2 (55 aa)
SPGRLPLSSAAARSPCLPHRPEPSRIFLYPPPPRSPWSTSPASTTTTTHLAGSQG*

>peptide 3 (62 aa)
RRAASHSPPPPRAHRVSHTGRSRAASSSILLLPGPHGPRRRLPPPPPPISRDLRGEVEVWMG*

>peptide 4 (68 aa)
VAGPPPTLLRRRALTVSPTPAGAEPHLPLSSSSPVPMVHVAGFHHHHHPSRGISGVRWRFGWDEEGGY*

>peptide 5 (39 aa)
MSSCYVTFSSSACFLAIEQEIVGCNTLLVSNGSKKFRTL*

>peptide 6 (38 aa)
MRREGTSGGNWERRPRKRVKVFDRSSRDARCCFSIGID*

>peptide 7 (38 aa)
MSQCYVLVCQLVLTFSMLFLVGFSEGNHKRSLSTSLFW*

>peptide 8 (35 aa)
MVQRNSGHCNLGNLVDLTLHYHSYKCFGVLGTKKIY

Sequence

>CNT30690231
GTCGCCGGGCCGCCTCCCACTCTCCTCCGCCGCCGCGCGCTCACCGTGTCTCCCACACCGGCCGGAGCCGAGCCGCATCTTCCTCTATCCTCCTCCTCCC
CGGTCCCCATGGTCCACGTCGCCGGCTTCCACCACCACCACCACCCATCTCGCGGGATCTCAGGGGTGAGGTGGAGGTTTGGATGGGATGAGGAGGGAGG
GTACTAGTGGTGGGAATTGGGAAAGACGACCCCGCAAGCGAGTCAAGGTCTTCGATCGGTCTTCCCGCGATGCTCGCTGCTGCTTTTCGATAGGCATTGA
CTAAGATATGGGTCTTACTCACACGGTTAATACTACAATCCTTCTGTGAAATTTCCACCAAGATTCTGGTTCATAAATTTGACAAGGACTCCAGAGAACT
TCAGAGGGGCATACAGAGCACCACAGAATAAATCAAGGTGGGATAAATGATAAATCGTAGCAACAGCAGAATAAGGAGGACACGGCATCGCTGTTTTAGT
ATAGCTCGTCAGGCAGCAGGCTCTATCACCACAGCTCCAGTACAAGCCAGGATGCCAACGATGATGCAACCTTAAATCTGACAATACCGCCCTCCTAAAA
GGGAATTCAATGTTGATGGACTTAAGCAGCCTGAAGTGTAACATGTGACATGACTCATGAGCCAATGTTACGTCCTCGTGTGCCAACTGGTATTAACATT
TTCAATGTTATTTCTTGTTGGTTTCTCAGAAGGTAACCACAAAAGATCGCTATCGACTAGCTTGTTTTGGTGAGTGTAGTCAAGTCAAATTGAAAGATTA
GCAGTGATTACACAAGATATTACATAACAAAAGGGAGAATCGAAACAAGAGCGCCTGCACTTTGCAAGCTCAATCTTGATAGCAATCCTAGCAACTTGAA
CTTCTTGGAATATGTTGTAACTTGTAAGGATGCTGAACTAATTAGGTTATATTAGTGGGATAGTATGTCTTCTTGTTATGTCACTTTTTCTTCTTCTGCA
TGTTTCTTAGCAATAGAACAGGAAATTGTTGGATGCAATACTTTGCTGGTGAGTAATGGTTCAAAGAAATTCAGGACATTGTAATCTAGGTAATCTTGTA
GATTTAACACTGCATTATCATAGTTATAAATGCTTTGGCGTGTTGGGCACTAAAAAGATTTATG