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Detailed information on CNT30690199


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT005030, E-value = 6e-106

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099738Oryza sativaOryza rufipogon99.5499.4398.27869forward
CNT30574622Oryza sativaOryza barthii82.9310097.79724forward

Expression of CNT30690199

Peptides detected in this lncRNA

>peptide 1 (35 aa)
DNPFFFLPFHLHCLFFLFFPQAELSSHFSSPNPIQ*

>peptide 2 (32 aa)
MSYASCVVIALPRAARAMSDLLQLGSCSVGLP*

>peptide 3 (30 aa)
MTLRPGCYHVSEVWWNLEKRGSENRNRFLR*

>peptide 4 (43 aa)
ITPSSSSPFIFTACSFFFFLKLSSHLTSPPQIPSNSPRSIHAC*

>peptide 5 (54 aa)
MHVRSQQSPSSKLSIHPNILHMHGELREIEIGEESGGFSLHGCSSNMTLFPSIC*

Sequence

>CNT30690199
GATAACCCCTTCTTCTTCCTCCCCTTTCATCTTCACTGCTTGTTCTTTCTTTTTTTTCCTCAAGCTGAGCTCTCATCTCACTTCTCCTCCCCAAATCCCA
TCCAATAGCCCAAGATCAATTCATGCATGTTAGATCACAACAATCCCCATCATCCAAGCTTTCCATCCATCCCAACATCTTGCACATGCATGGAGAGTTG
AGAGAGATTGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATGGTTGCAGCAGCAACATGACTTTGTTTCCCTCTATTTGCTAGGAGGTGGCTGCAG
CTCATCCGGTGTTAATCTCTTTTGATTTCGGTTGAAGCAGCCCTAGGCAACGTCTCTTACCGTCAGCCCGAGGCCTTGCTCCGTCTCTTGCCATCAGCCC
GAGGCCTTAGCCTCATGACCCTACGTCCAGGTTGCTACCATGTGAGCGAAGTCTGGTGGAATTTGGAGAAAAGGGGGAGCGAAAATAGAAATCGATTTCT
GAGATAGCTTTTGAGCTGAAAGAGATTCGGAGATTCCGGAGAGTAACGAGCCATATCCCGAGGAGGATAGTGACTACCCTCAGCAGCAAGGAGAGGATTC
CGGTTATGAGTTATGCTTCTTGTGTGGTCATTGCTCTGCCGAGGGCGGCGAGGGCAATGAGTGATCTCTTGCAGCTTGGCTCTTGCTCGGTTGGTTTGCC
CTAGTGGAGTTGTGGCACCACCGGTTTTATCTTTTGCTTATGAACTCTATTTGAGACTTCCGCTGCTATATTTATGTGTTGTATGTTGAGACCTCGGACC
CTATTATGTGTCATATACCTCGCTGCACTTTAACCCTATTATGGTACTTGCTATGTTTATTAATTGCTTGCGA