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Detailed information on CNT30690165


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT004039, E-value = 5e-131

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099767Oryza sativaOryza rufipogon95.5890.299.77865forward

Expression of CNT30690165

Peptides detected in this lncRNA

>peptide 1 (49 aa)
MHVNSMSGSSRCRLPGALHRRRTIFFTAAAVQTFPRLVQDDCLNGEEMI*

>peptide 2 (43 aa)
MKTHACQFDEWIEPLPSSRSSAPSPDHILHRCRCPDFPAPRSR*

>peptide 3 (42 aa)
SCISTHHSPPLSRRNRGRRLSTSPSPSSLPPAAKKNNYRTSQ*

>peptide 4 (40 aa)
QLHLHTSFSTSKPKKPREEALNFSVALILAAGREEEQLSY*

Sequence

>CNT30690165
CCAGCTGCATCTCCACACATCATTCTCCACCTCTAAGCCGAAGAAACCGAGGGAGGAGGCTCTCAACTTCTCCGTCGCCCTCATCCTTGCCGCCGGCCGC
GAAGAAGAACAACTATCGTACTAGTCAATAAGCCAGGATCGACGGGAACGCCGTCGTGCCCACGGCACTCCGGAGCGCGCTCCAAGCGCTGCCGCAGCCG
ACATCGTCGTCGTTCCGACCACTGTAGACAGTAGACCAAACCAAGCCGAGCTGTCGCGCCAACGTCTTCTCCTTGAAGTCTTACTCTAAAACCCTCAAAA
ATCCTAGGCAATGGCGCAGCAAGTGCGGAGATCGGCTACCGTCTTCTTCACCTCCGGTCGCCGTCGCCATTGTCGATTCCGCCTCCTCCGGTGAGCCATT
GTCCGATTCTTCGCGTATACACCATCCCTAGGACCTCACTAACCCCATGAAAACACATGCATGTCAATTCGATGAGTGGATCGAGCCGTTGCCGTCTTCC
CGGAGCTCTGCACCGTCGCCGGACCATATTCTTCACCGCTGCCGCTGTCCAGACTTTCCCGCGCCTCGTTCAAGATGATTGCTTAAACGGTGAAGAAATG
ATTTAGGCGCTGACATTTTCTTGATTCAAGGTTTTAGACTTAGTCTTTGAGTGATGCGGGTAATCGACGGCTTCTTCTAGGACTTGAACTTAATGGGGTA
AACCCCTAGTCGGTGTGCTTGTGGATTGGGTAGACAGGCTTCCGTTGTTCTATTATTTATTTGGCCGGTCGGCCAATGTAACTAAAGTAGATGTAGTTTA
TAATCGCTTTCATCTTATTTGTGTTTGCTATGTATAATCATGCTTGAGATGAAAGTGTGAATCTAGTGCACATCCTGGGAACTAGATTCACATGAGTATG
AGTTA