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Detailed information on CNT30690151


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000948, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30557434Oryza sativaPanicum hallii13.9132.4183.81105forward

Expression of CNT30690151

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MVVVIYLLLGIWERNQIASSTSSADLMKSMLFTPEGKWGK*

>peptide 2 (51 aa)
MGQMSTCWKDLVVYFQLCVASPSSLTQAAQNNENSSLHQKLGLGPSIITAH*

>peptide 3 (70 aa)
NDEDIPSNDTTTPIAQQGPMTRARARELNYQVKSFLANHTSSSQNWVLLNGCCDLLVVRNMGEEPNRQQH*

Sequence

>CNT30690151
AATGATGAGGACATCCCTTCCAACGATACAACCACGCCTATTGCACAGCAAGGACCAATGACTAGAGCTCGAGCTCGTGAACTTAATTATCAGGTAAAGT
CATTCCTAGCTAATCATACAAGTTCTTCTCAGAATTGGGTGCTACTAAATGGTTGTTGTGATCTACTTGTTGTTAGGAATATGGGAGAGGAACCAAATCG
CCAGCAGCACTAGCAGCGCTGATTTGATGAAGTCAATGCTCTTCACTCCGGAGGGCAAATGGGGCAAATGAGTACTTGTTGGAAAGATCTCGTCGTCTAC
TTTCAGCTATGTGTGGCCTCACCATCAAGTTTGACCCAGGCTGCTCAGAATAACGAAAATAGTTCTTTACATCAGAAACTTGGGCTTGGGCCTAGTATCA
TTACAGCCCATTAGAGGTCCACAAAACCTAGGGTTTGCTCCCACCTCCTCTCCTGGTCATTCCTCCACCTATATAAACTCCTAGCAGCCACCATTTTGCA
CTTTGGGTTTTGTTTTGATGTAAGTTTAGCTGCAGCTACTTCCTTGTACTCGCGTGTGTCGGCTAGACCACCCGGATACTTGTATTCAGAACCCCATTTT
GGTTTGTTTAAGTTTCATCATTTGACAAGTGCCGTGAGCTGTTTCCTTGTCAACTTGTTCTTGCTTGTTCTTCGATTGCTTGCAGGTTCAAGGTTGTTCT
TGGCACGGCAAGAACAGCAACAACGTGGAGTCGGTGTACCGGTTGCTAAGGCGCA