Detailed information on CNT30690150


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30675417Oryza sativaSetaria viridis53.1751.1988.74151forward
CNT30181115Oryza sativaSecale cereale57.3912.2984.66163forward
CNT30288970Oryza sativaTriticum aestivum38.037.9490.74108forward
CNT30385398Oryza sativaTriticum turgidum47.5412.4385.19135forward
CNT30435870Oryza sativaAegilops tauschii57.3913.0986.5163forward
CNT30244248Oryza sativaAvena sativa36.2716.390.29103forward
CNT30659305Oryza sativaTriticum dicoccoides52.1113.0787.16148forward
CNT308809Oryza sativaZea mays56.6955.1488.2161forward
CNT30680645Oryza sativaTriticum urartu57.3917.0385.89163forward
CNT30342715Oryza sativaEragrostis tef49.6515.6886.52141forward
CNT30368886Oryza sativaSorghum bicolor58.135.3387.88165forward
CNT30574985Oryza sativaOryza barthii10099.65100284forward
CNT30579874Oryza sativaEchinochloa crusgalli64.0870.5488.46182forward

Expression of CNT30690150

Peptides detected in this lncRNA

>peptide 1 (34 aa)
PRRAELRWRGRSRRAWRHRRTCWRPPGCRTAGST*

>peptide 2 (38 aa)
MAARRRSDAAMSARSPAQLSVGGWCGRVRVGCIVKGVL*

>peptide 3 (93 aa)
ETSRAEVARAKPASLAASAHLLATSRMSDCREHVILPAAPVSTPNALATCEDGRDGSAAEERCCHVRSLACSALSWWVVWPCPCGLYREGRFVR

Sequence

>CNT30690150
CCGAGACGAGCAGAGCTGAGGTGGCGAGGGCGAAGCCGGCGAGCTTGGCGGCATCGGCGCACTTGTTGGCGACCTCCCGGATGTCGGACTGCAGGGAGCA
CGTGATCCTGCCGGCGGCACCGGTGTCGACGCCGAACGCCCTGGCGACGTGCGAAGACGGGCGCGATGGCAGCGCGGCGGAGGAGCGATGCTGCCATGTC
CGCTCGCTCGCCTGCTCAGCTCTCAGTTGGTGGGTGGTGTGGCCGTGTCCGTGTGGGTTGTATCGTGAAGGGCGTTTTGTGAGG