Detailed information on CNT30690094


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552014Oryza sativaOryza glaberrima56.3287.1399.72352forward
CNT30595443Oryza sativaOryza meridionalis63.52100.7691.69397forward
CNT30369383Oryza sativaOryza glumipatula62.5695.1398.72391forward
CNT30575057Oryza sativaOryza barthii56.9689.4595.51356forward
CNT30115607Oryza sativaOryza nivara58.5687.77100366forward
CNT30603472Oryza sativaOryza punctata2845.5791.43175forward

Expression of CNT30690094

Peptides detected in this lncRNA

>peptide 1 (93 aa)
MLSCALVVRSNGCFGWWYIYRLDAEREKKTTINQRKKKNHIIFWRRSSWMEEDTRLDREARAPKAPSASRNESLAPPHRIMPSFRSRLECVNFP

>peptide 2 (35 aa)
RLINFTENSTGTSHHTNSYVDTRIVAEATSCLINR*

>peptide 3 (47 aa)
MGGFYCGLIKVGDSPAASVRLLRDFTCRTCSRCRSSCCRTCPTWSKI*

>peptide 4 (63 aa)
MAASAGGIYIGWMQRERRRRQLTKGRRRIISSSGDVAAGWRRTHASIERHALQRRHPPHETNL*

Sequence

>CNT30690094
ACGATTGATTAATTTCACTGAGAATAGCACGGGTACATCACATCACACAAATTCATACGTTGATACACGCATAGTCGCCGAAGCGACCAGCTGCTTAATT
AATCGATAACACACGGGTTTAATTCAGCAATAATCAGCACACACACAAACCACACTCATATGGGTGGTTTTTATTGTGGACTAATTAAGGTAGGTGACTC
GCCGGCGGCGAGTGTTCGGTTGCTTCGTGACTTCACTTGCCGCACTTGCAGTCGGTGCAGGAGCAGCTGTTGCCGCACTTGTCCGACATGGTCGAAGATT
TAATTAGCTAAGTGAGTGATGAGTTAATCCCTTGTGTTGCTTATGCTTTCTTGTGCTCTGGTGGTGAGGAGCAATGGCTGCTTCGGCTGGTGGTATATAT
ATCGGCTGGATGCAGAGAGAGAGAAGAAGACGACAATTAACCAAAGGAAGAAGAAGAATCATATCATCTTCTGGAGACGTAGCAGCTGGATGGAGGAGGA
CACACGCCTCGATCGAGAGGCACGCGCTCCAAAGGCGCCATCCGCCTCACGAAACGAATCTCTAGCTCCCCCACACCGGATAATGCCAAGCTTTAGGTCC
CGTCTGGAATGCGTCAACTTTCCGA