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Detailed information on CNT30690084


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099854Oryza sativaOryza rufipogon75.5954.6494.73607forward
CNT30574636Oryza sativaOryza barthii57.0446.7397.38458forward
CNT30603565Oryza sativaOryza punctata55.9215.7789.98449forward

Expression of CNT30690084

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MAMCIYMQSKNGNSARLFTTISLSLLSKHIEE*

>peptide 2 (69 aa)
MVVGLVAVKAVVAAAVVAEVVVVVVAVAVAVGVVVAVDLGLAGAMVAAVALGLEAAVTCAVALLTSAPDE

>peptide 3 (46 aa)
RVQASAVHSKPPSQTKKKDNIANLSTWQCVYTCNLKMVTQHAYLQQ*

>peptide 4 (66 aa)
MRLYITPYGYKVLAPPIESGCDDIFALICWPGGVFGSGCGKGCGGELGSGCGKGCGGALGSGCGKG*

Sequence

>CNT30690084
CAGGGTACAAGCCAGTGCAGTACATAGCAAACCTCCATCTCAAACAAAAAAAAAAGATAACATAGCAAACCTATCAACATGGCAATGTGTATATACATGC
AATCTAAAAATGGTAACTCAGCACGCTTATTTACAACAATAAGCCTCTCCTTACTATCAAAACATATAGAAGAATAGGCTAAACAATGGCATGAGATTGT
ATATTACACCGTATGGATATAAAGTTCTGGCTCCACCAATAGAATCCGGCTGTGATGATATCTTTGCATTAATTTGTTGGCCAGGAGGCGTGTTCGGGTC
TGGTTGCGGCAAAGGCTGTGGCGGCGAGTTAGGGTCTGGTTGCGGCAAAGGCTGTGGTGGTGCGTTAGGGTCAGGTTGCGGTAAAGGTTGAGGGTTGTTT
GGGTCTGGTTGCGGCAAAGGTAGTGATGGCGCGTTAGGGTCTGGCTGCGGCAGAGGTTGCGGGTTGTTTGGGTTAGGCTGCGGCAGAGGCAACGGCGGAG
CGTTCGGGTCTGGCTGAGGTAAAGGCTGGGGATTTGGGTTTGGCTGTGGTAACGGTTGGGGGTTTGGGTTCGGCTGCGGGCCGGGTTGCGGTAATGGTTG
TGGGCCTGGTAGCGGTAAAGGCTGTGGTTGCGGCTGCGGTTGTGGCAGAGGTTGTGGTTGTGGTTGTGGCTGTGGCTGTGGCTGTGGGAGTGGTTGTGGC
TGTGGATTTGGGTTTGGCTGGGGCAATGGTTGCGGCTGTGGCCTTGGGTTTGGAAGCTGCTGTAACTTGCGCTGTGGCCCTACTAACCTCGGCACCTGAT
GAG