CANTATAdb - search

Detailed information on CNT30690060

BLAST search results

BLAST vs Swiss-Prot:
sp|P48494|TPIS_ORYSJ, E-value = 9e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30552389	Oryza sativa	Oryza glaberrima	22.06	66.26	100	218	forward
CNT3074905	Oryza sativa	Brassica juncea	11.13	54.73	85.45	110	forward
CNT30140926	Oryza sativa	Lolium perenne	6.98	25.56	85.51	69	reverse complement
CNT30369298	Oryza sativa	Oryza glumipatula	23.28	51	100	230	forward
CNT30574974	Oryza sativa	Oryza barthii	25.2	59.29	100	249	forward
CNT30603466	Oryza sativa	Oryza punctata	20.04	52.24	97.98	198	forward

Expression of CNT30690060

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MILFRHLPTPKVNGVKILGGLHGGGVDDVDEFRLQNKERETKTINIRLCCQLLAVRTSYGTS*

>peptide 2 (37 aa)
MMSMNSGYRTKKGRRKPSTSGFAASSLQFAPVTEPHR*

>peptide 3 (67 aa)
CSVVCIISIAQAAGSFREVKGRKKSSCSSTKLLALHKHRKRYDPLQTSSHAEGEWGEDLRRTSRWRS*

Sequence

>CNT30690060
TATGTTCAGTGGTGTGCATTATTAGCATTGCTCAAGCTGCAGGTAGCTTCAGGGAAGTGAAGGGGAGGAAAAAGAGTAGCTGCTCCAGCACAAAACTACT
AGCATTACATAAGCACAGAAAAAGGTATGATCCTCTTCAGACATCTTCCCACGCCGAAGGTGAATGGGGTGAAGATCTTAGGCGGACTTCACGGTGGCGG
AGTTGATGATGTCGATGAATTCAGGCTACAGAACAAAGAAAGGGAGACGAAAACCATCAACATCAGGCTTTGCTGCCAGCTCCTTGCAGTTCGCACCAGT
TACGGAACCTCATAGGTAACAATTATGGAACGTGCAGAAGTTCATGAATGAACACTTTGTGTGCTTATCAATATAAGAAACTTACTTCTTGTGCTTGATC
TGGTGTAGCAACTTTACCAGTTCCAATGGCCCACACAGGTTCATAGGCAACAACCACATTAGTCCAATCCTTGATCCTTTCTAAATTGCTTTTGTTTGTG
CAGCAACAACATCCATGGTCGAACCAGATTCCCGCTGCTCGAGAGTCTCACCAACACATGCAATGACCTTCAAGCCCTGAGAGAGCGCATATGCCACTTT
GTCTCCAACAAACTCATTTGATTCACCCAACAAACTCCTCCTTTCAGAGTGTCCAAGAATAACCCAGGGAATACTAAGGTTGACAAGCATCTCAGCGCTG
CATTTCACCGGTGAAAGCCCCGCCCTTCTTCACCCAACAATTCTGAGCAGCAACTTGGATCTCCGGGCGCAGCTGACTCTTGACCACGGGAAGGAACACA
TAAGGTGGGCTGACAACCACCTCTGCAGCACAATGAAGCAATCTGTCCCTCATTCAGAATTTTCACAATTTTGTCCACCTGATCAGTGAAAAAAATTACG
CATTTCCAGTTGCCACCAACGAAGAACTTGCGGCCCATCTCGACGAGAAGCTGATTAGATGGAACTGGACGCGGGGGGGGGGGGGGGG