Detailed information on CNT30690051


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002231, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554571Oryza sativaOryza glaberrima67.8354.2195.381126forward
CNT30597213Oryza sativaOryza meridionalis65.4287.8694.381086reverse complement
CNT3099672Oryza sativaOryza rufipogon99.778.498.311655forward
CNT30578083Oryza sativaOryza barthii62.2989.697.491034reverse complement

Expression of CNT30690051

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MTLRPGCYHVSEVWWNLEKRGSENRNRFLR*

>peptide 2 (35 aa)
DNPFFFLPFHLHCLFFLFFPQAELSSHFSSPNPIQ*

>peptide 3 (57 aa)
MVDEICWTWTGDRAMMGGWFPLMQVAPSRSLRTEHFDIYSSTLRTYHMSYLGPACSY*

>peptide 4 (71 aa)
MHVRSQQSPSSKLSIHPNILHMHGELREIEIGEESGGFSLHGCSSNMTLFPSIWSSISIIAARRWLQLIRC*

>peptide 5 (43 aa)
ITPSSSSPFIFTACSFFFFLKLSSHLTSPPQIPSNSPRSIHAC*

>peptide 6 (50 aa)
MWIIMDVIMLDGGVGMLCHVGMDFGSPWMMMRAPFGLICLYISELYTCCP*

Sequence

>CNT30690051
GATAACCCCTTCTTCTTCCTCCCCTTTCATCTTCACTGCTTGTTCTTTCTTTTTTTTCCTCAAGCTGAGCTCTCATCTCACTTCTCCTCCCCAAATCCCA
TCCAATAGCCCAAGATCAATTCATGCATGTTAGATCACAACAATCCCCATCATCCAAGCTTTCCATCCATCCCAACATCTTGCACATGCATGGAGAGTTG
AGAGAGATTGAAATAGGAGAAGAGAGTGGTGGTTTCAGCCTGCATGGTTGCAGCAGCAACATGACTTTGTTTCCCTCTATTTGGTCATCCATCTCCATTA
TTGCAGCTAGGAGGTGGCTGCAGCTCATCCGGTGTTAATCTCTTTTGATTTCGGTTGAAGCAGCCCTAGGCAACGTCTCTTACCGTCAGCCCGAGGCCTT
GCTCCGTCTCTTGCCATCAGCCCGAGGCCTTAGCCTCATGACCCTACGTCCAGGTTGCTACCATGTGAGCGAAGTCTGGTGGAATTTGGAGAAAAGGGGG
AGCGAAAATAGAAATCGATTTCTGAGATAGCTTTTGAGCTGAAAGAGATTCGGAGATTCCGGAGAGTAACGAGCCATATCCCGAGGAGGATAGTGACTAC
CCTCAGCAGCAAGGCAAGCACCTAAGCATATAGAACCTATACTTTCTCTAAAAATGATTTGGTTGCAATCTATACGTATATATATGCATGCATTGCCTAG
ATATTAATATTGTCAGTTTATGGTGTATGGGTAGAACCTATTTATGCATTTAGTTCTTGTGTTATTGCTGTCCTTATATCCTATTACCACTTGTTGGGAT
TACTTGGGATTTCTTATTCATTAATGCTTAGCCATGCTTAGTGCTAATAGAACTATAGGGATGGACAGTGCTATTAATTGTGGTATATAAACAACTTGCA
TTATTGGGCATAAAACTTGAGCACTTACACTAAATAATGGTTGATGAAATATGTTGGACTTGGACGGGTGATAGGGCGATGATGGGAGGTTGGTTTCCCC
TGATGCAAGTAGCCCCGTCTAGGTCGTTAAGGACCGAACATTTTGACATCTATTCAAGCACCCTTCGTACTTACCACATGTCTTATTTGGGACCGGCTTG
TTCTTACTAGTTCTACTGTGATCATTTATACCACATTGGAGAGTTGTGAGGCAGGTAGCCTTTGGAGGGCCTCGGGTGCCTAGGTTTGGCCGGGGGTGCC
TCCTGCGTGGCGCGCCCACCTTGGTCACATCACGCACGCACGTGACTGAGTCGTCGGGAACCCCAGCGTGGTATAGGTGGTTGGGGTGGGGCTAAGAAAG
GGCATTTAATGAGCTTGAATCACTTGTGTACCGCACTTGACGGGGTGTGTAGCATTTGATCTTTGTTCATTTCGTGTGGGTCCAATTGTACACCTCTGAT
CAAAGTATAATCTATTCGAATAGCCGCGTCCTCGGTTATGGACAATGCTTGATGTGTTAGCTAGTTATGTTAGCATCAAATGTGGATTATTATGGATGTG
ATTATGCTTGATGGTGGTGTTGGCATGTTGTGCCATGTTGGTATGGACTTTGGTAGTCCATGGATGATGATGAGAGCGCCGTTTGGGCTCATTTGCTTAT
ACATTTCAGAATTATATACTTGCTGTCCATAAATTAAAATGATGCTAGATTTACTTATCC