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Detailed information on CNT30690049


BLAST search results

BLAST vs Swiss-Prot:
sp|C0HLV2|NEPRN_NEPVE, E-value = 2e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30574898Oryza sativaOryza barthii19.269899.18245forward

Expression of CNT30690049

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MKLIHLDCMVLEKRMVECRLIGDVHTIYDISI*

>peptide 2 (45 aa)
MMASSPHNCLAVATTSCPPLGPSKLNNHTHIVCCHRWRQGISCHR*

>peptide 3 (85 aa)
PVSGTGRTSDNVIAIGQRSYQAHTFWWFEMVGGINNLDCSAVGGLAKPFLREMSTAHGCGNLRRIHLPTPFHSIGNACLQEGKDG*

Sequence

>CNT30690049
CCCAGTTAGTGGTACTGGACGAACCAGCGATAACGTTATAGCAATTGGGCAGCGGAGCTATCAAGCCCACACCTTTTGGTGGTTTGAGATGGTTGGAGGA
ATCAACAACTTGGATTGCTCTGCTGTAGGTGGCCTTGCCAAACCCTTCCTCAGGGAAATGTCCACTGCCCATGGGTGCGGTAATTTGAGGAGAATACACC
TCCCCACCCCATTCCACAGTATCGGCAACGCCTGTCTGCAGGAGGGTAAAGATGGATGATGGCCAGTAGCCCACATAATTGCCTTGCAGTTGCAACCACC
AGTTGCCCCCCGCTGGGTCCTTCCAAACTAAATAATCATACTCATATTGTGTGCTGCCATAGATGGAGACAGGGGATAAGCTGCCACCGATGACGAACTG
CGGGTTTGTCTGGATGAACCCTGAGCACGCTAGATTGTAACATCCCGTTGTGTTATATGCATCACGCTACAATATATATTCCATTACTCTTGTATTGATC
TTGCTCTTTAGGTGTCATGTACCTGCCATCCTGCTTCAATGGTATTAAGGTCCTTGTTTTCATAGGAGCCCGCTGTGATCCATAGCTGGGACAAGCTGAA
ATCACCGAATGTTGCAATCGTTGGTTGCCACACATTGATGGTCACTTTGGTTCCGTAGTAGTTGGAATCCCCAGGTGGTACTATACGTGGTGGCCGTCCG
TGACACCACCCAAGTGAGAGTGAGGGTGAGGGCTCCCGCCGTGCGTCTTCTTGCCAAACGTTGTAACAGAGGTGGCCCTCATGACATCCTCCTCCTTGGT
CCTTCGGATCGGTATAGTATTGTCAGGGCACTTTTCGCCATTCTGATTCCATGTTTGGGTGAATGGACGTGTTGCTTCTCCATATAGGCCACTTGGCTGG
ATAGAAGTGGAATTATATATGAAGTTAATTCACCTGGATTGTATGGTCCTTGAGAAGAGGATGGTCGAATGCAGGTTGATTGGAGATGTGCACACAATCT
ATGATATCTCCATCTAGGCTCTGCATGCCAGTTAATTTATGATCATATATGTAATAAGTCGTAGTATATAATTAGCTAGTTTGCATGCAACTAGATGTGA
AATGCCAAAGGTACGTACCTGAAAGGTTGCGAGGGGAGGCTTGTTGAGGCGCTTGAGGAGGCTCCGCACCTGCCGCCGCCGCAAAGAAGTAGACGAAGTA
GCTTCCGATGGCGAGAAGAGAGCCACCAGGAGGAGGAGCGCCACCACCAAGCACGCCCTTGCTGCTGCCATT