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Detailed information on CNT30690033


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000279, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30110178Oryza sativaOryza longistaminata47.828.0999.06532reverse complement
CNT30574764Oryza sativaOryza barthii58.4958.4999.23651forward

Expression of CNT30690033

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MISISTMHMHNICDAYCIKFLENMYVCRPVVVNCK*

>peptide 2 (30 aa)
KSPPRPPSSSSLFFSFSPSLPHVLSSAAAS*

>peptide 3 (66 aa)
KAHLDHLLPLLSFSRSPLLSLTFSPAPPLPRQRRRPPLRRLPHPTPATPLAVAGLNQLLGSSLLCP*

Sequence

>CNT30690033
AAAAGCCCACCTAGACCACCTTCTTCCTCTTCTCTCTTTTTCTCGTTCTCCCCTTCTCTCCCTCACGTTCTCTCCAGCGCCGCCGCTTCCTAGGCAGCGC
CGGCGACCTCCCCTGCGCCGGCTGCCACACCCCACTCCGGCGACCCCTCTAGCCGTCGCCGGGCTGAATCAGCTTCTTGGCTCCTCACTTCTCTGCCCCT
AAGCTAACCCTAGCCTCTGACCTCTTCAACCTAAGATGCAACCGGCGGCCAATTCTGGCGAGATAAGGATTTAGGGAAGTTTCCCAGGCCCCTACCGCTG
GATCTACTCTCCTCCCCTATTTTAATTTTTGGTTACCTCTGATGATTCTACCGTGATTGAAAAATATGTGGTTCAGCTCCTCCTTCAGAAATCCAAGTCT
TCTCTTCTACTGCTGCTCTTCTGGATCTAAGATTTGGTTCACCACTCTCTGATTGCTTGGCCATGGTTACTACTACTTGTTGATTCATGTATTGGTTTGA
GCTGGACTTCAGTTGAGCTATTTCTGTCCGGGTGGAGCTAACATTCTAGCTGATTTTCCTAAGCTTGGTTCTATGATTCTAACTACTACTGCCGCAGCTG
CTGCTATTGCTCTACTGCGGTAGGTGCTTGAGGTGGTTTTCCAGCCGATGCAACCGAGGCTGGGGTTCACTGAATAGTTTGGTTGATATATATGTGAATT
TGGTGAAGACTAGGTGACTCACCTACTTTAGTTTTGGTGGTTGTTTCACTGACTGACACCTAAGCAGTGCTTGATCGGTGGAGTAATGTGGGATTTCACT
AAATTTTTCTAGTTACATAAATTCTGATACAATTAGGTACTTTTGCACTTGAGTCCCTCGGGGTCTCTAAAATTGAAGTTTACTCTGAGATTAGGGACTG
ATTTGTAATTGTTCTAGAACTCAAGAGTTTTTCTGAAAACTAAATAATTATTGAATCTTTGACTGAGATGGTTCAGTTTATGATATGATATCCATAAGCA
CCATGCATATGCACAATATATGTGATGCATACTGTATAAAATTTCTAGAGAACATGTATGTATGCAGACCTGTAGTGGTAAATTGTAAATAAAGAACTGT
GATTTCTACTGTG