Detailed information on CNT30690017


BLAST search results

BLAST vs Swiss-Prot:
sp|P93604|LRK10_WHEAT, E-value = 1e-105

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552135Oryza sativaOryza glaberrima19.8667.2787.95224forward
CNT30109318Oryza sativaOryza longistaminata22.9610086.1259forward

Expression of CNT30690017

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MWWILPMVATSLMKSSPLQSDFPSNILMATWMSPGRSTPLYTDPYPPWPNLSLKWLVIAMMSV*

>peptide 2 (69 aa)
MTPKLRHAISGAIYPNVPRKALSDTKLFSLGYNFARPKSATFGIKLSSRRMLSGLMSKCRICISHPWCR*

>peptide 3 (53 aa)
HPHPPPLRSQSTRRSKGKLNPSQAQEEAACYLHRRKMASEALATHQHPLRASL*

>peptide 4 (39 aa)
MLGSMPYSNLSLHLGLRSFYLQPSQAAAFQSYKHRICWI*

>peptide 5 (40 aa)
MDVTREKHTLVYRSVSSLAQLIPEMACDCYDVCVGVPLWT*

>peptide 6 (31 aa)
MHVNSTRYLINLLIYYKLVIHPCWVVCPTRI*

>peptide 7 (37 aa)
MPSLEPYTQMFLVKPYLTQSSSPLGTILQGRNQRPLE*

>peptide 8 (31 aa)
MPRAISLSLSHEKLLSDEKIYLFKDPLGMYS*

>peptide 9 (40 aa)
MTSLIVGRSYDFIWMHQNTTSHSFLSFSCMSIALDISSTC*

Sequence

>CNT30690017
CCATCCACATCCTCCTCCTCTGAGATCGCAGTCAACTCGGAGGAGTAAAGGCAAATTGAATCCATCACAGGCACAGGAGGAGGCGGCGTGCTATCTCCAT
CGCAGAAAAATGGCCTCGGAGGCACTTGCAACGCATCAACATCCCCTTCGAGCATCTCTATGACCTCACTCATTGTTGGCCGATCATATGATTTCATCTG
GATGCACCAAAACACAACAAGCCACAGCTTCCTCTCTTTCTCATGCATGTCAATAGCACTAGATATCTCATCAACTTGTTGATCTACTATAAGCTGGTCA
TACACCCATGCTGGGTAGTATGCCCTACTCGAATTTGAGTTTGCATTTGGGTCTGCGTTCTTTCTACCTCCAGCCATCTCAAGCAGCAGCATTCCAAAGC
TATAAACATCGGATTTGCTGGATATGACGCCAAAACTACGACATGCCATCTCTGGAGCCATATACCCAAATGTTCCTCGTAAAGCCCTATCTGACACAAA
GCTCTTCTCCCTTGGGTACAATTTTGCAAGGCCGAAATCAGCGACCTTTGGAATAAAGTTGTCATCCAGAAGGATGTTGTCTGGCTTGATGTCAAAGTGT
AGAATCTGCATCTCGCACCCTTGGTGCAGGTAGTTGATCCCTCTAGCAATGCCCAGAGCAATCTCATTGAGCTTGTCCCACGAGAAGCTTCTCTCGGATG
AGAAGATATACCTGTTTAAAGATCCTCTAGGCATGTATTCATAAACCAGAGCTCTTCTCATTTCTTCGGAGCAGAACCCCACAAGACGAACCACGTTGAT
GTGGTGGATTCTGCCTATGGTGGCAACTTCACTGATGAAGTCTTCTCCGTTGCAGTCGGATTTTCCATCCAACATCTTGATGGCAACATGGATGTCACCA
GGGAGAAGCACACCCTTGTATACAGATCCGTATCCTCCTTGGCCCAACTTATCCCTGAAATGGCTTGTGATTGCTATGATGTCTGTGTAGGCGTACCTCT
TTGGACCTAGCATCTCTTGCATCCGGAGGAACTTCTCCACTGCATCGATCGCTATCCTTGTTTTCCAGTACTTGTGGGCAAGAAATGTGAGTACCACCAG
CGGTGCCAACACGAACCTGCATAGAACT