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Detailed information on CNT30690016


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552290Oryza sativaOryza glaberrima10083.33100580forward
CNT30595586Oryza sativaOryza meridionalis8098.9395.91464forward
CNT30369171Oryza sativaOryza glumipatula10097.9799.66580forward
CNT3099731Oryza sativaOryza rufipogon10058.3599.83580forward
CNT30603526Oryza sativaOryza punctata10099.1593.62580forward

Expression of CNT30690016

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MQLLRWLPELARLKWKSEIRVEVYRGRKPILRQQPMGLPVDFAEH*

Sequence

>CNT30690016
GTTTCTTTGGAGACAGGGGTCTTCACCTCTTCAGCATTTAAACTCCACTGATCCATCATAAGCGGGTAACTTTGTGGAATCAAAGCATTTGGTGGCGAAG
TTGGCAACATTGACTGATTAGTTCCTTTAGCAAGACTCTCACTTGGAGGGAATGCAGCTATTGCGGTGGCTACCTGAGCTTGCACGTTTGAAATGGAAGT
CGGAGATACGTGTTGAGGTGTATCGAGGAAGAAAGCCCATCCTTCGTCAGCAACCAATGGGGCTGCCTGTTGACTTTGCTGAACACTAGTCGTAGGTGGC
AGTTGTTGGTCAAAGCCAGCAAATAAATCTATTGACGGAGGGGTAGAGGAAATTGAAGGTTCCTGCAAAGGCGACAGACTCAAGAGATCATGATGGACAG
GATGAGATGTAGAGGGTGCTTCGGCTTGAACAGGTGGTGAAGATGCCACGGCTTTCTGAACCACAACGTCATGCAGAGTTTCTTTAGGAACAGAATGGCT
GCCTACATCAACTGCTCTATGGGGAACTGATGGAGCCTGTTGGTTAAAGCCAGCAAAAAGATCTATTGGTGCTGCAGAAT