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Detailed information on CNT30690003


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3099597Oryza sativaOryza rufipogon20.9718.6799.11112forward
CNT30603430Oryza sativaOryza punctata20.9722.4994.64112forward

Expression of CNT30690003

Peptides detected in this lncRNA

>peptide 1 (34 aa)
RKNTQMRVSTSTHPHKMNTDQALASTSSGRSGAK*

>peptide 2 (79 aa)
MAVIITIIIMVINRKIVDLGEGGTSRISHRRRDGTGLSGGWRRRGRRRRRRRAPRRGASRPRRRRRWRRPPGRRGWRGP*

>peptide 3 (82 aa)
MAAKRKAAAEATSAAARGVAAAPAAEMAATARTARMARALDPAAAITSIRWLVVGGGGEKVLEGGGIMGREREDVLLVLVWRW

Sequence

>CNT30690003
GCGGAAGAACACTCAGATGAGAGTATCTACAAGCACACACCCACACAAAATGAACACAGATCAAGCACTAGCTAGTACTAGTAGCGGCAGATCTGGAGCA
AAATGAGACACGAATAATAATAATAATAATAATAATAATAACCAACAAATTTCGCTAGCTAGCGATGGCAGTAATAATAACAATAATAATAATGGTGATA
AATAGAAAAATAGTAGATCTAGGCGAAGGCGGCACTAGCCGGATCTCCCATCGACGGAGAGACGGGACGGGGCTCAGTGGCGGATGGCGGCGAAGAGGAA
GGCGGCGGCGGAGGCGACGAGCGCCGCGGCGAGGGGCGTCGCGGCCGCGCCGGCGGCGGAGATGGCGGCGACCGCCAGGACGGCGAGGATGGCGAGGGCC
TTAGATCCGGCGGCGGCCATCACTTCGATTCGGTGGCTGGTCGTCGGCGGCGGCGGAGAGAAGGTTCTAGAAGGCGGAGGAATAATGGGGAGAGAGAGAG
AGGATGTTTTGCTTGTGCTCGTGTGGAGGTGGGG