CANTATAdb - search

Detailed information on CNT30689988

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT007511, E-value = 1e-47

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30369817	Oryza sativa	Oryza glumipatula	29.24	19.48	84.97	193	forward
CNT30107677	Oryza sativa	Oryza longistaminata	30.3	63.29	89.5	200	forward
CNT30100934	Oryza sativa	Oryza rufipogon	28.94	11.31	87.43	191	reverse complement
CNT30576476	Oryza sativa	Oryza barthii	29.85	39.17	83.25	197	reverse complement

Expression of CNT30689988

Peptides detected in this lncRNA

>peptide 1 (45 aa)
VRPAVARDGTIRGVSALGAAPCGAVAISGVVRGAAGSGSRQRARH*

>peptide 2 (37 aa)
MQFDSLPRWFRRAVSLTWRVRGSVNLICGVDVALRWY*

>peptide 3 (81 aa)
CGRPWLVTALFGACRLSVRRRAAPWPSAVLCGARPAAVRGSARATRRANEEKVREREEGREMMWHPDMWGPRGSHADLAAT*

Sequence

>CNT30689988
GGTGCGGCCGGCCGTGGCTCGTGACGGCACTATTCGGGGCGTGTCGGCTCTCGGTGCGGCGCCGTGCGGCGCCGTGGCCATCAGCGGTGTTGTGCGGGGC
GCGGCCGGCAGCGGTTCGCGGCAGCGCGCGCGCCACTAGACGAGCAAACGAGGAGAAAGTGAGAGAAAGAGAGGAAGGGAGAGAGATGATGTGGCATCCT
GACATGTGGGGCCCACGTGGGTCCCATGCTGACTTAGCAGCCACGTAGGATAAAACCGGGACCAAAACCGCCGAGGGACCTATTGTGACCAGTTTTGTAT
AGTTAAGGGACCTCGTATATCTGGTATTGCGGTTTGAGGATGTTTTTTTATCTCGATGACAAGTTGAGGGACATTCGGTGTACTTTTTCCTAGAAAGTTT
AGGAATAAGTTCACTTGGACTCCCTTAAGTAGTGACCGAATCTGATTCGTATTCTCGAATCGCAATACCGGATATCTCGACCCACAACTATTAAAACCGA
TGCAATTTGACTCCCTCCCTCGTTGGTTTCGGAGGGCGGTTTCGCTGACATGGCGTGTACGTGGTAGTGTTAACCTGATTTGTGGTGTTGATGTGGCACT
TAGGTGGTATTAATATTAAAATTATATAAGTGGTATCCATTTGTTGCTCATAAAAAAAAT