CANTATAdb - search

Detailed information on CNT30689944

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000283, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30115482	Oryza sativa	Oryza nivara	67	99.83	96.34	601	reverse complement

Expression of CNT30689944

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MVHCGELCCAEGIVTASIRALSSIATHGRHDVEAVSCGYSGTPLARVKLFE*

>peptide 2 (42 aa)
EEGSEAFEEAQGCQTEKRREVRGVAGDSMPLVIFIEEVIMIQ*

>peptide 3 (40 aa)
MTCNNQSTSVKEKGSRRRRRLAYTPVELPVEVELKPSLDR*

>peptide 4 (34 aa)
RKVQKRLRKLKGARLRSGEKSVGSLGTPCLWLYL*

>peptide 5 (29 aa)
MSLYYAILWYPCTLEYLLCGLLSMSYDLQ*

Sequence

>CNT30689944
GAGGAAGGTTCAGAAGCGTTTGAGGAAGCTCAAGGGTGCCAGACTGAGAAGCGGCGAGAAGTCCGTGGGGTCGCTGGGGACTCCATGCCTCTGGTTATAT
TTATAGAGGAGGTGATTATGATCCAGTAATGGTGCACTGTGGTGAGTTGTGTTGTGCAGAGGGTATTGTCACAGCCTCTATTCGGGCACTTTCCAGTATC
GCGACGCATGGTAGACATGATGTTGAGGCTGTGTCTTGTGGGTACAGTGGTACACCTCTGGCCAGAGTAAAACTATTCGAATAGCCGTGCCCGCGGTCAT
GGGCGGGTTGAGCAATGTTTTTCGTGATTAGTCTCACACCTCTCACAAATAATTATTGATGCTATAACTGGTAATAATTTGTTTAGCTTCTGGTTTGGAA
TTAGATCTGTATAGCCGAGTATGGTTGTTCAGGATGGTTGGGCCTGAGCAGCATGGGCGTGTTGTTCAGTGTTGATTAAAATTAATGATTACTCTACTGT
TTTACTATTCTTAAATAGTTGCTAAATACTGCTTTTGCAAATGAGCCTATATTATGCCATCCTTTGGTATCCTTGTACACTTGAATATTTGCTGTGTGGC
TTGTTGAGTATGTCATATGACTTGCAATAATCAATCAACCTCAGTTAAAGAAAAAGGATCCAGAAGGAGAAGACGTTTGGCTTATACCCCAGTTGAGCTG
CCTGTGGAAGTGGAGCTGAAGCCATCGCTAGACCGTTAATTCCGTTGCTGTTTTTTTTTCTTTTGTAAATATGTAACGTTATTATTAAGATGGATTTGTA
CATTAACAGACAAAATTGTCTGTTTGTGTACCTCGGCTGATTCCTGGACGAGGATTTTTATGCACAAATAAGTTCGGAAATTACTAGTGAATTTCCT