Detailed information on CNT30689928


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000696, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552031Oryza sativaOryza glaberrima60.1759.5399.29281forward
CNT3099732Oryza sativaOryza rufipogon62.159.4398.28290forward
CNT30574923Oryza sativaOryza barthii76.4564.3299.44357forward
CNT30115624Oryza sativaOryza nivara58.6759.5799.27274forward

Expression of CNT30689928

Peptides detected in this lncRNA

>peptide 1 (39 aa)
ERVILMTKHARLSRKENVTCQKTSGFLSGFTLELHFIQA*

>peptide 2 (39 aa)
MTNLWVADETFCQLRIDASILLHFFHLYKTTTLLARNHG*

>peptide 3 (53 aa)
MKLFVSCGLMLASYFTSFTFTRPPLCLQETMGDPSFFSLFSFTNQIKTWIKVI*

>peptide 4 (48 aa)
RESNTHDQARTPVKKGECHLSENIRISQWIYIGVAFYSGMRGEKWQLN*

>peptide 5 (35 aa)
MSLVRKHQDFSVDLHWSCILFRHEGGKMAVKLVTG*

Sequence

>CNT30689928
AGAGAGAGTAATACTCATGACCAAGCACGCACGCCTGTCAAGAAAGGAGAATGTCACTTGTCAGAAAACATCAGGATTTCTCAGTGGATTTACATTGGAG
TTGCATTTTATTCAGGCATGAGGGGGGAAAAATGGCAGTTAAATTAGTTACAGGTTGATAGGAAATGGAGAGATTATTACAGGCCAAAGAGATCTTATTA
ATCTGGCCTGTTTTACAGTTTATTTTTTTTCTTTGATGACAAATTTATGGGTGGCTGATGAAACTTTTTGTCAGTTGCGGATTGATGCTAGCATCTTACT
TCACTTCTTTCACCTTTACAAGACCACCACTTTGCTTGCAAGAAACCATGGGTGATCCTTCTTTCTTTTCTCTTTTTTCTTTCACCAATCAGATCAAAAC
CTGGATCAAAGTTATCTAACTCTTCAGGAAATGAGGTCATTTTCATAGTCGGCAGATTTGCAGTATC