Detailed information on CNT30689915


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066678Oryza sativaLeersia perrieri7.1938.6883.78111forward

Expression of CNT30689915

Peptides detected in this lncRNA

>peptide 1 (58 aa)
MQMGLVHPANFCVLYQTNGTSIPLIIFLIVPLGLFHICFRLNSLTRASSGIVTDFKIS*

>peptide 2 (68 aa)
MGLATLIFSNAMAAAAAAGCGAACLGDREPVGSSRRRRRMWERKIGTGREKDASSWASAFKEQTGGRYG

>peptide 3 (49 aa)
GRSRLRDISIYGLLGSTTICTDAVNVHSVQNENSNGNGDTAKMTLKEGK*

>peptide 4 (54 aa)
MTGNRAMGSFSFNCFSIRAHLHIKQSTYSYLELRNHSAHLHRNSCKPTHSPLHS*

>peptide 5 (40 aa)
MCKNVLPSIIFLQDCVFGAKIKRPFLLISSCHRSFSKSSD*

Sequence

>CNT30689915
TTGGGAGGTCCCGTCTACGTGATATCAGCATCTATGGACTGCTTGGATCGACAACAATTTGTACCGATGCTGTAAATGTTCATTCAGTCCAGAATGAGAA
CTCGAATGGTAATGGTGATACAGCCAAAATGACTTTAAAAGAAGGGAAATGAAGCACTGAAGTTGGCAAGAGTATCTTGTAAAAAGCTCAGTTGGCTGCC
AGTCTTGACCGGAGCTCCGCAGCAACCGCATCAATGAACTCTTCAGTGTTCAGGTAATGGCTTCTTGTCTTTGGTCATCTTCCCAGATTCCACGGTTCCA
ACGCAAGCAGCTTCAAGTTTTAGTGCAAAGTCAAGAAGTCTAGCATTTAGGTAGGACTTGTACCTGTGTGCAAGTCCTCTGGTCCAAGCAAAGATTGAAG
CAATGCTGTTTGTGCTGGTTTCACCTCCCTTCTGGTGAACACGGAAATGACGGGTAACCGTGCCATGGGCAGCTTCAGCTTCAATTGTTTTTCCATCAGG
GCACACCTACATATTAAACAAAGTACATATTCGTACCTTGAGCTAAGAAATCACTCTGCACATCTCCATCGTAATTCTTGCAAGCCCACACATAGCCCCC
TTCACTCTTAAGTGCATAAGCAACCATGTCATCGATGAGACGATGCTCATACCTACCAGAAGTCAAGATCATGACACATATTTGAATAAATAGTAGGTGC
AAATGTGCAAAAATGTACTACCTTCCATCATATTTCTTCAGGATTGTGTTTTTGGTGCTAAGATAAAGCGGCCATTTCTTCTCATAAGCAGTTGTCATAG
AAGCTTCAGCAAAAGCTCGGATTGACTATAAAACAGTTACAGGAATGGTCAGAAAAATACATTACTTTTCAACTAAAGAAAACTAAATATGGACCAAGCA
ACCATACCAAAAACCAGCTTGAGCTTGCCAGGCCCCTTCAGAACTGCATCAGTTGCTCGGTACTGATCACCAAAAGCATGCCTTCCAATGCAAATGGGCT
TAGTCCATCCTGCCAATTTCTGTGTGTTATATCAAACTAATGGTACCAGCATACCATTGATAATATTCCTAATTGTGCCATTGGGGCTCTTCCACATTTG
CTTTAGGTTGAACTCCTTAACCCGAGCCTCATCTGGAATAGTCACGGACTTTAAAATATCTTAAATTCCTTACTTGAGAGTAGCCTCTGCAGCCTCCACG
GTGACCTTGTCATCAGTTGCATCACGGTGGAGAACTCCCAAGTCATAGTACTTAATGTCCAGATCCAAAAATGGAAAGATAAGCTGAAATAAACAAGATT
AGGGAAGCGGGGGATCTAACCGTCCATCTCGACGATGGGGTTGGCGACCTTGATCTTCTCGAACGCCATGGCGGCGGCGGCAGCGGCCGGGTGCGGCGCT
GCTTGCCTCGGAGATCGGGAGCCGGTGGGAAGCAGCCGGCGGCGGAGGAGGATGTGGGAAAGGAAGATTGGCACGGGCAGAGAGAAAGATGCGAGCAGTT
GGGCGAGCGCATTTAAAGAACAGACGGGTGGGAGGTATGGGTC