CANTATAdb - search

Detailed information on CNT30689869

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT3099840	Oryza sativa	Oryza rufipogon	86.78	97.84	99.56	453	forward

Expression of CNT30689869

Peptides detected in this lncRNA

>peptide 1 (43 aa)
MLSQKQTEKRKRESDSSQLLSCAYFMCCLLRAYSLNSQSAIGH*

>peptide 2 (47 aa)
MLCEESDVSGESAFAGEEFEEFQGQQGECLSRTDLRTTSTPLKSTWL*

Sequence

>CNT30689869
GGTTAGTGCGTTTTGCAAATTCGCAGGCCCTATCTTGTGGTATGAACTGAGTACGCGATGATTTATCCTGCGTATTGGGGGCTTACCATAAGATAAAGCC
GTGAATTTGCAAAACGTTCAAACCCACTGAAGTGTTGTTTGAAGGTAAATATTTCGAAGGGTTCGTGAAGAAAAGGCATGTAAATATTTAGTTATTTCCC
CATGACATGCTAAGCCAGAAACAGTCTAGCTGCATGTGATATGCTCAGCCAGAAACAAACAGAAAAGAGAAAAAGAGAGAGTGACTCTTCCCAGCTTTTG
TCATGTGCATATTTCATGTGTTGTCTACTTAGAGCCTACTCGTTGAATTCGCAAAGTGCTATTGGTCACTGAAATGTTATGTGAAGAATCCGACGTTTCC
GGAGAGTCCGCTTTTGCCGGAGAAGAATTTGAAGAGTTCCAAGGCCAGCAAGGTGAATGTCTTTCACGGACAGACCTACGGACCACCTCAACACCGCTGA
AATCAACGTGGCTGTAGTCTTG