Detailed information on CNT30689864


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000140, E-value = 1e-142

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30595547Oryza sativaOryza meridionalis19.3527.3810095forward
CNT30369204Oryza sativaOryza glumipatula48.2745.4999.16237forward

Expression of CNT30689864

Peptides detected in this lncRNA

>peptide 1 (66 aa)
MDGVVVGRTTARSRASRAGVAAGERARAIGSLDRTADGAPLLSFSTLLRCDATWACELCVGRREAEA

>peptide 2 (36 aa)
MRGARRTSTRAEHPAHTQQGNGRDAAAAAGRSAARR*

>peptide 3 (30 aa)
MALRSSPSLLCFGATRLGLVSSVWGGGRRRR

>peptide 4 (37 aa)
MDGWRRRRSDDGEVARITRGRSCGRESESHRITRSDG*

Sequence

>CNT30689864
AGCAGATGAAATTGAAAGGAAATTAAACTGATTTATTACTTGTTCCATTAAAACCATCACACTCGGGTACGTGGTGAAACCGTGAAAGTTAAAAAACAAA
AACAGTAGTAGTAGAGTGAGGCCCTGCTCGCTGTTACATGAGAGGTGCACGAAGAACCAGCACACGAGCAGAGCATCCAGCCCACACGCAGCAAGGAAAC
GGTAGGGATGCCGCCGCCGCCGCCGGCCGATCCGCCGCCCGGCGATGATGCGTCGTGATGAGTAGTTGACGCGGAGCAGATATATATGGATGGATGGCGT
CGTCGTCGGTCGGACGACGGCGAGGTCGCGCGCATCACGCGCGGGCGTAGCTGCGGGCGAGAGAGCGAGAGCCATCGGATCACTCGATCGGACGGCTGAT
GGCGCTCCGCTCCTCTCCTTCTCTACTCTGCTTCGGTGCGACGCGACTTGGGCTTGTGAGCTCTGTGTGGGGAGGAGGGAGGCGGAGGCGG