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Detailed information on CNT30689838


BLAST search results

BLAST vs Swiss-Prot:
sp|Q84M43|CESA2_ORYSJ, E-value = 4e-40

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30671433Triticum urartuSetaria viridis47.9944.2793.71143forward
CNT30639474Triticum urartuNymphaea colorata37.9217.9984.96113forward
CNT30532104Triticum urartuEucalyptus grandis23.8319.0987.3271reverse complement
CNT30500458Triticum urartuCoffea canephora47.3225.1385.11141forward
CNT30270249Triticum urartuChenopodium quinoa41.956.2583.2125forward
CNT30493203Triticum urartuOlea europaea27.8521.3485.5483forward
CNT30287901Triticum urartuTriticum aestivum34.2338.49100102forward
CNT30393905Triticum urartuTriticum turgidum40.9437.5493.44122forward
CNT30144912Triticum urartuMedicago truncatula18.7920.8287.556forward
CNT30314318Triticum urartuCamelina sativa28.8628.187.2186forward
CNT30216Triticum urartuZea mays30.5429.5589.0191forward
CNT30608876Triticum urartuGossypium raimondii44.6324.7781.95133forward
CNT30229639Triticum urartuAnanas comosus41.9521.2684125forward
CNT30362547Triticum urartuSorghum bicolor89.2654.7388.35266forward
CNT30706792Triticum urartuPrunus avium41.619.9383.06124forward
CNT30102429Triticum urartuOryza rufipogon84.2335.390.44251forward

Expression of CNT30689838

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MTQNCSFLHHSSMPTPLHLISRIPVAKIERKSAMN

>peptide 2 (34 aa)
MCRDTSNDPELFIPPPLVNANTTPPHLKDTSGEN*

>peptide 3 (48 aa)
LVTTVDGVGGASNDTNHVNDQNGRRRDEKRRPLEHVELSKVAFFVISL*

Sequence

>CNT30689838
ATTGGTAACCACTGTTGATGGCGTAGGAGGTGCCAGCAACGACACCAACCATGTTAATGATCAAAATGGTCGTCGGAGGGATGAGAAGCGTCGTCCACTT
GAACATGTAGAGCTCAGCAAAGTCGCCTTCTTCGTCATTAGCCTTTGAGAAGACCCTGAAAGACGGCAAACAGATGTGCAGAGATACCTCCAATGACCCA
GAACTGTTCATTCCTCCACCACTCGTCAATGCCAACACCACTCCACCTCATCTCAAGGATACCAGTGGCGAAAATTGAAAGGAAGAGCGCAATGAACC