Detailed information on CNT30689646


BLAST search results

BLAST vs Swiss-Prot:
sp|Q2QLY4|METE2_ORYSJ, E-value = 6e-52

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30672500Triticum urartuSetaria viridis53.8248.1494.19155forward
CNT30404178Triticum urartuBeta vulgaris32.9924.7484.2195forward
CNT30555769Triticum urartuOryza glaberrima76.745293.21221forward
CNT30440702Triticum urartuAegilops tauschii97.2284.8599.64280forward
CNT30721905Triticum urartuTriticum spelta10085.2199.65288forward
CNT30361575Triticum urartuSorghum bicolor72.5732.7189.95209forward
CNT30597233Triticum urartuOryza meridionalis76.7460.0592.76221forward
CNT30104304Triticum urartuOryza rufipogon76.7462.4394.12221forward
CNT30578403Triticum urartuOryza barthii76.7462.2594.12221forward
CNT30118096Triticum urartuOryza nivara76.7473.9192.31221forward
CNT30333335Triticum urartuCynara cardunculus59.0347.6285.88170forward

Expression of CNT30689646

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MSNGLGRHRAWRWCQEPDHSRRRCCWGCT*

>peptide 2 (40 aa)
MYLIPASAICFQMLALRSVATFSKSSALLLPSQKDSRANLS

Sequence

>CNT30689646
CGCCTTAGCCTCCTTGTACTCATTGATAGCCTTGTGAGAAGAGTAGGAGAACTTGGTGCTCAAATTGATCTCCCCACCGGTCCATGAGTAACGGTCTGGG
ACGGCACCGAGCATGGCGGTGGTGTCAAGAACCTGATCATAGTAGGAGAAGGTGTTGCTGGGGATGTACTTGATCCCAGCATCAGCCATCTGCTTCCAGA
TGCTGGCCCTGAGGTCAGTGGCAACCTTCTCCAAATCCTCGGCGCTGCTCTTGCCATCCCAGAAAGACTCCAGGGCAAACTTGAGCTC