Detailed information on CNT30689542


BLAST search results

BLAST vs Swiss-Prot:
sp|P12862|ATPAM_WHEAT, E-value = 3e-178

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30226711Triticum urartuHordeum vulgare55.1199.7897.69911forward
CNT30434820Triticum urartuAegilops tauschii22.2610099.46368forward
CNT30103343Triticum urartuOryza rufipogon24.2653.7597.26401forward

Expression of CNT30689542

Peptides detected in this lncRNA

>peptide 1 (51 aa)
MIRSTWACTSIIFKYWVMRTTNLIHIITICQACHILRKMSCGLKIIRYRYR*

>peptide 2 (34 aa)
MFFPSMFFLGFLVDDSKYLGLHLHNFQILGYANH*

>peptide 3 (34 aa)
MCKKAKIAYWGSFGEKSLLPTSASKGQPFLLIHR*

>peptide 4 (34 aa)
MPESQHQGLTQIERRRPLRDIVPIPVLNYRRLVS*

>peptide 5 (33 aa)
MARKSIFNNYVQKGQNSLLGFIWREKPSSYICE*

>peptide 6 (36 aa)
LSKVVTPDPKHPFSIHREIQSSKSIKRPSSTKRTRY*

Sequence

>CNT30689542
CCCTTTCAAAAGTGGTTACTCCCGATCCGAAGCACCCCTTTTCCATTCATAGAGAGATCCAATCGTCAAAATCAATAAAAAGGCCATCATCGACCAAGAG
AACGAGATATTGACTTTTTTACGTCTGTAACTACATTCTCACATTCCTTTTTTGATCTCATGACTTTTTATGCGATCGGAAAACGAATGAGATCAGAAAG
GCCATCATTGGGGCAAACAATGCAATAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAACCAAATGATTGTTTAGCCAATGATGGGTTTCGCGCCACGG
AATGAATCAAAGAACTGAGGACATTTCCAATACCGACAGCAGCTCCGGCTAAAGCAATTGTAGCAGCTCCGGCACCTATTGATTTAGCACCTTCTAACAT
CTCGAGTCGAGAAAACACTTTTCTTGTCATGTTTTTTCCTTCGATGTTCTTTCTTGGATTTCTTGTTGATGATTCGAAGTACTTGGGCCTGCACCTCCAT
AATTTTCAAATATTGGGTTATGCGAACCACTAATTTGATACATATTATCACAATTTGCCAGGCTTGTCACATATTAAGGAAAATGAGCTGTGGATTGAAA
ATCATCAGGTATAGGTATAGGTAGGGGGTCCGTCAACCCTTGTGGGCTGGGTGGGGTATCCTGAACTACTGGAGCAGCTCCCCCTTGTGGCTGGGGTAGA
CTCTCAGCAGCTTGGTTTACGCATGGCACGAAAATCTATCTTTAATAATTATGTGCAAAAAGGCCAAAATAGCCTATTGGGGTTCATTTGGCGAGAAAAG
CCTTCTTCCTACATCTGCGAGTAAGGGGCAACCTTTTTTATTAATTCACAGGTAAGGCAAAGTGCTTTCTTTTAAAGAAGCATCTGTTTCCATCTTTCTT
TCGTTAGTTAAGCCACCTTTTTCTAAGAATGATTTTTGTAATTCAGGATTAATAGTACTTAGAATGGCTTTTTCATATTGAGAAATTCTGTCTAGTGGCA
TTCGATCACAGAAGCCGTTGACAGCAGCATAAATCACAACAATTTGTTTTTCAATTGGAAGTGGTTCATATTGTGGTTGTTTGGGCACTTCTGTAAGCCT
TGCACCTCTATTGAGTAATGCCTGAGTCGCAGCATCAAGGTCTGACCCAAATTGAGCGAAGGCGGCCACTTCGCGATATTGTGCCAATTCCAGTTTTGAA
CTACCGCAGACTTGTTTCATAGCTTTCAACTGAGCGGCAGACCCGACGCGACTGACGGATAAGCCAACGTTAATAGCTGGTCTAATTCCGCGATAAAAGA
GCTCTGTTTCCAAACAGATTTGTCCATCTGTAATGGAGATCACATTGGTGGGGATATAGGCCGATACGTCTCCAGCTTGTGTTTCAATCACGGGTAACGC
AGTCGAGCTGCCTGCATCTATCTGGTCTGATCGTTTAGCGGCTCTTTCTAAGAGACGGGAATGTAAATAGAAAACATCCCCTGGGAAAGCCTCACGGCCT
GGTGGTCGGCGTAACAATAATGACATTTGTCGATATGCCACCGCCTGTTTACTTAGATCATCATATATAATTAATGCGTGCATTCTATTATCACGGAAAT
ATTCCCCCATGGCACACCCTGAATATGGGGCCAGAAATTGCAGAGGAGCAGGA