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Detailed information on CNT30689225


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30730522Triticum urartuCorchorus capsularis31.4153.3987.3370forward
CNT30184713Triticum urartuSecale cereale23.6856.9498.57279forward
CNT30223767Triticum urartuHordeum vulgare28.4489.195.22335forward
CNT30445979Triticum urartuSaccharum spontaneum15.4546.3197.8182forward
CNT3025593Triticum urartuPopulus trichocarpa12.3920.2289.73146forward
CNT30149145Triticum urartuBrachypodium distachyon32.9421.694.33388forward
CNT30103542Triticum urartuOryza rufipogon41.9469.6893.12494forward

Expression of CNT30689225

Peptides detected in this lncRNA

>peptide 1 (42 aa)
MKVHATQPKKDNGKLPEMSTKGMPYTPGQITSMTIEIVSISM*

>peptide 2 (34 aa)
MDQQPNHPFYEKEGAWSYSNSKRFVIFNQFCASI*

>peptide 3 (32 aa)
MVYSYEISYKIEGIRNGYNEILDSILRPNLFD*

>peptide 4 (31 aa)
MAGSGPFLKRCFYRIPIHNNFYFWFRRTNNH*

>peptide 5 (48 aa)
MVLFKFKALRNLQPVLCFNIISRSKRYSLFPIFSSLIKPSFRNFRITL*

Sequence

>CNT30689225
AATGTGAGTAGGATCACTTAGCCATGCTTCATAATTGGAAAAACAGGCGCCATGAAAGTACATGCCACTCAACCAAAGAAAGATAATGGAAAGTTGCCCG
AAATGAGCACTAAAGGTATGCCATACACCCCGGGGCAAATCACCAGTATGACTATCGAAATCGTGAGCATCAGCATGTAGGTTCCAGATCCAAGTGGTAG
TATCAGGGCCCTTAGCTAGTGTTCTTGAGAAATGGCCGGGTCTGGCCCATTCCTCAAAAGATGTTTTTACAGGATCCCTATCCACAACAATTTTTACTTC
TGGTTCCGGCGAACGAATAATCATTAAGTCCTCCTCTTTCCGGACAAGACATACAAAGAGACCCGCCAACTGTCTTTTTAGTGAATCTTTGAAAGATATA
TATTTTGAAAGATAGATTTTGAAAGATAGATTTTGAAAGATAGATATTGTGATTAGTTCTTTTCTTTACTATCTACCATCCTTCTATTTTTTTTTTAGTT
ATTCACTGGAGCAATTATATATTGAAGTCAATCCGAGGCAAGTGTTCGGGTCTATTATGACATAAAGATTAGGTGCCTAACGGACATTGTTTATCTTGAA
AAACAAATATTTCTCGACGTAAGAAAAAAATCTTTTTTATTTTTAATTTAAGAAACTAGTGTATTTTTTTTGAGGGCATAAGCTCCTATCTATATCTACT
TTCCTTGAGCATAATATAGGGTTTTTTATTTGATTCTAAATTCCAAGATAACTCATTAGAATTATTAATAAGATGGTCCTAATATATTAGCAATATTTAG
ATTGCCCCCTCTTTTTATTCACTTTATTACTTCTATTCTAGACCCTATCCCTATGGTTTATTCTTATGAAATATCATATAAAATAGAAGGTATAAGAAAT
GGATATAATGAAATTCTTGATTCGATCTTACGACCTAATTTATTTGATTAATGGATCAACAACCAAACCACCCATTTTATGAAAAAGAAGGAGCATGGTC
TTATTCAAATTCAAAGCGCTTCGTAATCTTCAACCAGTTCTGTGCTTCAATATAATTTCCCGGAGTAAGCGCTATAGCTTGTTTCCAATATTCAGCAGCT
TGATCAAACCAAGCTTCCGCAATTTCCGAATCACCCTGTAGAATGGCCTATAGTCGCACGTAATGACAGATCACGGCC