Detailed information on CNT30688859


BLAST search results

BLAST vs Swiss-Prot:
sp|Q43875|NLT42_HORVU, E-value = 8e-38

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30390769Triticum urartuTriticum turgidum24.3920.3285.43151forward
CNT30444121Triticum urartuAegilops tauschii28.4351.0184.66176forward
CNT30367388Triticum urartuSorghum bicolor15.6726.7284.5497forward
CNT30117815Triticum urartuOryza nivara15.6728.1285.5797forward

Expression of CNT30688859

Peptides detected in this lncRNA

>peptide 1 (60 aa)
YIKIIHGTWYNILVYLLKGSEGTTKHRYYTGRPCRIGSTYVVLSLTWRSDQSIYSCICSI*

>peptide 2 (85 aa)
IYQNYTWYMVQHTRLSSQRERRNNQTSILHWPAMQNWLHVRSPLSHMEIRSEHLFMYMQYIGNLKILSIDRWSYNLRCWRQAIDH*

>peptide 3 (36 aa)
MHRHAAFLSAAVCTWPANLLTPLQQAADGLAPLPRA*

>peptide 4 (41 aa)
NISKLYMVHGTTYSFIFSKGAKEQPNIDTTLAGHAELAPRT*

Sequence

>CNT30688859
AATATATCAAAATTATACATGGTACATGGTACAACATACTCGTTTATCTTCTCAAAGGGAGCGAAGGAACAACCAAACATCGATACTACACTGGCCGGCC
ATGCAGAATTGGCTCCACGTACGTAGTCCTCTCTCTCACATGGAGATCAGATCAGAGCATTTATTCATGTATATGCAGTATATAGGTAACCTCAAAATAC
TCAGCATCGATCGGTGGAGCTATAATCTGCGATGCTGGCGGCAAGCAATCGATCACTAGATCTTATTGCAGTTCACTGTTGAGCTGATCTTGTAGGGGAC
GCTGACGCGGCACTTGGAGGGGATCTCTGCGGCCTTGCCTTCTTTGACCCCACCGGCAGCACTCTTGATGCACAGGCACGCCGCTTTCTTGTCAGCGGCG
GTCTGCACTTGGCCGGCCAATCTCCTGACGCCGCTGCAGCAGGCCGCAGACGGGCTGGCGCCGTTGCCGCGTGCATAGGAAAGGCAGGGGCCAAGGGCGG
AGTTCACCTGGCCGCAGGAGATTGCCGCGTCGGAGGCTACAAGGAGGAGTGCCGCCACCAGGGCGACCAGCACGAGCTTAGTAGCTGTAGTGCGAGCCAT
CTCGACCGAATTATTTTTT