Detailed information on CNT30688824


BLAST search results

BLAST vs Swiss-Prot:
sp|P04165|CYB_MAIZE, E-value = 0.0

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30548225Triticum urartuIpomoea triloba50.0358.6495.57723forward
CNT30378677Triticum urartuArabidopsis thaliana59.3131.2895.22857forward
CNT30619453Triticum urartuSesamum indicum16.4734.195.8238forward
CNT30180581Triticum urartuSecale cereale79.5851.6698.611150forward
CNT3088309Triticum urartuVigna radiata11.1420.0594.41161forward
CNT30481172Triticum urartuChara braunii15.6467.8782.74226forward
CNT3038142Triticum urartuCucumis melo27.5457.7694.22398forward

Expression of CNT30688824

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MRRGGHRISRYIIVGMPQNIRSKKNPNGKKDSRSYPTYKILYIKIRVRSNFIHLRMYTQWII*

>peptide 2 (52 aa)
MKKFCLRANYLALFKRTSISISTKKELKINESNIVVLLLFFPCGALERREFE*

>peptide 3 (53 aa)
IGRKLELRTYISLKKGKAKRDIKTGAIAATPPALSGILRRMAWIGRKYHSGTI*

>peptide 4 (49 aa)
MRRFIPFWREGGSESPGLRICRLVDSRNKVIQKKTAAFSAGFLRLQTND*

>peptide 5 (36 aa)
MKVNHNEKHTCPISMHITEQPAPFNISHNVFYVVES*

Sequence

>CNT30688824
AATCGGTCGAAAACTTGAACTACGCACATACATTTCTTTAAAAAAAGGTAAAGCCAAGAGAGATATAAAAACTGGTGCTATTGCGGCTACACCTCCCGCT
TTGTCAGGTATACTGCGAAGAATGGCATGGATCGGTAGGAAATACCATTCCGGCACAATATGAGGCGGGGTGGGCATCGGATTAGCAGGTATATAATTGT
CGGGATGCCCCAAAACATTAGGAGCAAAAAAAATCCAAATGGAAAAAAAGATAGTAGAAGCTACCCGACCTACAAGATCCTTTACATAAAAATAAGGGTA
AGAAGCAATTTTATCCATCTCAGAATGTACACCCAATGGATTATTTGATCCATATTGATGCAATGCGGCCAGATGAAGAAGACTGGCGCCTACTAAAATA
AGGGGGAGTAAATGATGGAGACTAAAAAAACGATTTAAGGTGGCATTGTCCACGGAGAAACCACCCCAAAGCCAAGTCACTATGGTATCTCCTACTACTG
GTATGGCGCTAGCTAAGCTTGTAATTACTGTTGCTCCCCAAAAGCTCATCTGACCCCAAGGTGGTACGTATCCTATAAAAGCTGTCACAATCATTAATAG
GAATATGACAACTCCGAGACACCGAACAAATTCCCTAGGACTGCTATAACTCGCATGATATAGACCACGAAAAATATGAAGGTGAACCACAATGAGAAAC
ATACTTGCCCCATTAGCATGCATATAACGGAGCAACCAGCCCCCTTCAACATCTCTCATAATGTGTTCTACGTTGTTGAAAGCTAGATCTACATGAGGTG
TGTGATGCATAGCTAAAAAAACGCCAGTCACTATCTGAATGACTAAACAAATACCTGCTAACGAACCGAACCCCCACCAATAACTAAGATTGCTCGGGGT
TGGATAATCTATCAAATGCTTGTTAAGTGTGGAGTATATAGGTTGTTTAAGAAGAGAGAATCATTGGTTCCTTATAGTCATTAATATTTTCTATCGTTAC
AACTCCTCTTCCCCCTTATTTACCCCCTTGCCTTGATGGAAATTGGCTTCGCTGCGCCCTAAATAATCAAAAAGCTGCATGAGAAGATTCATCCCATTTT
GGCGAGAGGGAGGCAGCGAATCACCTGGGCTACGGATTTGTCGGTTAGTTGATTCTCGAAATAAGGTCATTCAGAAAAAAACTGCCGCTTTCTCTGCCGG
TTTCTTAAGGCTTCAAACGAATGACTAGTCATTAAGAAACCCATGAAATCCAAGTCTATTTTTGACCTTTCATGAAGAAGTTTTGCCTGCGCGCAAACTA
CCTAGCCCTTTTCAAAAGAACGTCGATTTCCATCTCAACAAAGAAAGAACTCAAAATAAATGAAAGCAATATTGTTGTCCTATTACTCTTTTTTCCTTGT
GGAGCTTTGGAAAGGAGAGAATTTGAATAAAGTAACTCTCGGAAA