Detailed information on CNT30688822


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6YZY5|GL811_ORYSJ, E-value = 1e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30240671Triticum urartuAvena sativa57.1858.6480.35458forward
CNT30664982Triticum urartuTriticum dicoccoides96.3891.891.84772forward
CNT30469790Triticum urartuSaccharum spontaneum70.1652.7780.25562forward
CNT30140763Triticum urartuLolium perenne35.08100.3682.56281forward
CNT30102982Triticum urartuOryza rufipogon23.161.6781.08185forward

Expression of CNT30688822

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MSPTGKTNTSPLLSTFERNLFLFGAGWLDVTKPTYNVPSSTVRISVARGCVCGGF*

>peptide 2 (48 aa)
EKYETLEPKKHMRSYQCAKNDIVNYSEGRNTFTHYRHNNGMTYAPFIL*

>peptide 3 (58 aa)
MRAIEMPRVLSPAICMTLIKVTLDPTLLVTLGLSRAAALKKSSTLTSIGFLQTNPLTRT

>peptide 4 (67 aa)
MHIYKLKHVLNLRTGPPCNKPTVSLSCGCSPRTGPEASLLYSFPPETPWQEHHRIFVGLTQTPHWQL*

>peptide 5 (67 aa)
MLHLFYRLGCISTNSNMSLICALVLRVISQPFHLVVVVLPELGLKPVYCILFHLKRLGKNIIGYLWV*

Sequence

>CNT30688822
TTGAGAAATACGAAACATTAGAACCAAAAAAGCATATGAGATCATATCAGTGTGCTAAAAATGATATTGTCAATTATTCAGAAGGTAGAAATACATTCAC
TCATTACAGACACAACAATGGGATGACATATGCTCCATTTATTTTATAGATTAGGATGCATATCTACAAACTCAAACATGTCCTTAATTTGCGCACTGGT
CCTCCGTGTAATAAGCCAACCGTTTCACTTAGTTGTGGTTGTTCTCCCAGAACTGGGCCTGAAGCCAGTCTACTGTATTCTTTTCCACCTGAAACGCCTT
GGCAAGAACATCATCGGATATTTGTGGGTCTGACCCAAACACCGCATTGGCAATTGTGATAGCCCCTGGGTTCTGGCTGCTGAGCGCGGCAATTGCAACG
GCAGGCTTGTGGGGGTTGGGGTTGAATTGGAAGTGGATGAGCCCCACGGGGAAGACGAACACATCACCTTTGTTGAGCACCTTCGAGAGGAACTTGTTTC
TGTTTGGGGCGGGCTGGTTGGATGTAACAAAGCCAACATACAATGTCCCCTCGAGCACCGTGAGGATCTCAGTGGCGCGAGGGTGCGTATGTGGTGGGTT
CTGACCCAAGGGAGCATAGTCAATGCGCGCAATTGAGATGCCGAGGGTGTTGAGTCCAGCAATCTGCATGACGTTGATCAAAGTGACGTTGGATCCAACC
TTGTTGGTCACCCTAGGCTTGTCGAGGGCGGCTGCCTTGAAGAAGTCATCAACGTTAACCTCCATTGGGTTCTTGCAAACAAACCCATTGACACGTACTG
G