Detailed information on CNT30688678


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30523577Triticum urartuSetaria italica55.7556.3885.39349forward
CNT30668234Triticum urartuTriticum dicoccoides93.9310098.98588forward
CNT30263845Triticum urartuBrassica rapa32.435882.76203forward
CNT30370935Triticum urartuOryza glumipatula74.648.2484.15467forward
CNT30150023Triticum urartuBrachypodium distachyon10083.4788.5626forward
CNT30497803Triticum urartuDigitaria exilis68.8559.9481.21431forward

Expression of CNT30688678

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MWGCSSGMLASMMDWSESMMDWSGCRKESQAYMMERWGCSWAMQGCMMEKWDCNHVLALG*

>peptide 2 (31 aa)
MDCNHLQRMGCSLTGRVRMPCPQHMVRTEHL*

>peptide 3 (36 aa)
MRARSDYKPVMLDYSSEMWGYSLVMLGCSSEMWGCS*

>peptide 4 (38 aa)
SDCTGSSSLGCLENKHVKDCTWPKKDCSSVKWGCSSVK*

Sequence

>CNT30688678
GTCTGACTGTACGGGCTCATCATCCTTGGGCTGCTTGGAGAATAAGCATGTGAAGGACTGTACTTGGCCGAAGAAGGATTGTAGCTCGGTGAAGTGGGGC
TGTAGTTCGGTGAAGTAGGGCTGTAGCTCGGTGACGTCGGGCTGTAACCAGGCGATGTAGGGCTGTATGCAGGCGATGTAGGGCTGTATGAGGGCGAGGT
CGGACTATAAACCGGTGATGTTGGACTATAGCTCGGAGATGTGGGGCTATAGCTTGGTGATGTTGGGCTGTAGCTCGGAGATGTGGGGCTGTAGCTAGGA
GATGTGGGGCTGTAGCTCGGGGATGTTGGCGAGTATGATGGACTGGTCGGAGAGTATGATGGACTGGTCGGGCTGTAGGAAGGAGAGCCAGGCGTATATG
ATGGAGAGGTGGGGCTGTAGCTGGGCGATGCAGGGCTGTATGATGGAGAAGTGGGACTGTAACCATGTCCTGGCCCTGGGCTGAACACCGGAGAAGATGG
ACTGTAACCACCTCCAGAGGATGGGCTGTAGTTTGACGGGACGGGTGAGAATGCCATGCCCCCAACATATGGTGAGAACTGAGCATCTGTAATTGGGGAA
GCCCTGAAATTTGGACTCAACATTGG