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Detailed information on CNT30688674


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678637Triticum urartuSetaria viridis29.0894.3398.43383reverse complement
CNT30641615Triticum urartuNymphaea colorata34.2481.4190.47451forward
CNT30549212Triticum urartuIpomoea triloba64.0927.9792.54844forward
CNT30270599Triticum urartuChenopodium quinoa57.2546.3192.31754forward
CNT30730494Triticum urartuCorchorus capsularis63.7895.4592.98840forward
CNT30294119Triticum urartuTriticum aestivum20.6599.6398.9272reverse complement
CNT30396824Triticum urartuTriticum turgidum57.3374.9899.34755reverse complement
CNT30569398Triticum urartuActinidia chinensis50.1133.7892.27660forward
CNT30552690Triticum urartuOryza glaberrima62.8754.0898.55828forward
CNT30442196Triticum urartuAegilops tauschii59.2391.9899.87780reverse complement
CNT30657980Triticum urartuTriticum dicoccoides30.4598.2899401reverse complement
CNT303548Triticum urartuZea mays60.9756.3999.38803reverse complement
CNT30207763Triticum urartuHelianthus annuus57.4881.6694.45757forward
CNT30720843Triticum urartuTriticum spelta16.3210099.53215forward
CNT30620564Triticum urartuCajanus cajan56.3414.3492.18742reverse complement
CNT30596724Triticum urartuOryza meridionalis30.5216.6299.25402reverse complement
CNT30354697Triticum urartuLactuca sativa26.4249.2997.41348forward
CNT30481523Triticum urartuChara braunii4.9427.0895.3865reverse complement
CNT30410483Triticum urartuPapaver somniferum63.7841.0693.69840forward
CNT30642274Triticum urartuCannabis sativa43.5170.1392.84573reverse complement
CNT3036965Triticum urartuCucumis melo53.9197.5392.39710forward
CNT30331560Triticum urartuDioscorea rotundata13.3634.8595.45176forward
CNT30150154Triticum urartuBrachypodium distachyon62.8772.3899.03828forward
CNT30104374Triticum urartuOryza rufipogon62.8762.3598.31828reverse complement
CNT30576813Triticum urartuOryza barthii14.9626.7398.98197forward
CNT30604015Triticum urartuOryza punctata38.27104.3595.63504reverse complement
CNT30174498Triticum urartuVigna angularis30.1478.6188.41397forward
CNT30551087Triticum urartuOryza brachyantha24.22107.0591.85319reverse complement

Expression of CNT30688674

Peptides detected in this lncRNA

>peptide 1 (34 aa)
TPEVCPSQSSHTRERSSQCSNAHTGYGPNCLTMF*

>peptide 2 (35 aa)
MSIWPEETFAHLRYLLGGLRPIETVYLRLSLGPRV*

>peptide 3 (36 aa)
MSALSSDFPRASGITAETATGSPPIRGWSDRSMEIG*

>peptide 4 (56 aa)
VHQRCVLPSPLILGKGPLNALMPTPDMDRTVSQCSEPSSRTALMGEQPNPWNILQL*

Sequence

>CNT30688674
GTACACCAGAGGTGTGTCCTTCCCAGTCCTCTCATACTAGGGAAAGGTCCTCTCAATGCTCTAATGCCCACACCGGATATGGACCGAACTGTCTCACAAT
GTTCTGAACCCAGCTCACGTACCGCATTAATGGGCGAACAGCCCAACCCTTGGAACATCCTACAGCTCTAGGTGACGAAGAGCTGACATCGAGGTGCCAA
ACCTTCCCGTCGATGTGGACTCTTGGGGAAGATCGGCCTGTTATCCCTAGAGTAACTTTTATCCATTGAGCGACGGCCCTTCCACCCGGCACCGTCGGAT
CACTAAGGTCGACTTTCGTCTCTGCTCGACGGGTAAGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAAGACCAATGTCCATCTGGCCCGAGGAA
ACCTTTGCACACCTCCGTTACCTTTTGGGAGGCCTACGCCCCATAGAAACTGTCTACCTGAGACTGTCCCTTGGCCCTCGAGTTTGACACAAGGGACAGT
CTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGCGTGCAAAGGTTTCCTCGGGCCAGACGGACATTGGTCCTCGAGTGCAAA
GGCAGAAGGGAGCTTGACTGCAAGACTCACCCGTCGAGCAGAGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGG
ATAAAAGTTACTCTAGGGATAACAGGCTGATCTTCCCCAAGAGTCCACATCGACGGGAAGGTTTGGCACCTCGATGTCGGCTCTTCGCCACCTGGAGCTG
TAGGTGGTTCCAAGGGTTGGGCTGTTCGCCCATTAATGCGGTACGTGAGCTGGGTTCAGAACGTCGTGAGACAGTTCGGTCCATATCCGGTGTGGGCGTT
AGAGCATTGAGAGGACCTTTCCCTAGTACGAGAGGACCGGGAAGGACGCACCTCTGGTGTACCAGTTATCGTGCCTACGGTAAACGCTGGGTAGCCAAGT
GCGGAGAGGATAACTGCTGAAAGCATATAAGTAGTAAGCCCACCCCAAGATGAGTGCTCTCTCCTCCGACTTCCCTAGAGCCTCCGGTATCACAGCCGAG
ACAGCGACGGGTTCTCCACCCATACGGGGATGGAGCGACAGAAGTATGGAAATAGGATAAGGTAGCGGCGAGACGAGCCGTTTAAATAGGTGTCAAGTGG
AAGTGCAGTGATGTATGCAGCTGAGGCATCCTAACGAACGAACGATTTGAACCTTGTTCCTACACGGCCTGATCAAATCGATCAGGCACTTGCCATCTAT
CTTCATTGTTCAACTCT