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Detailed information on CNT30688464


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONZMAT001339, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30676938Triticum urartuSetaria viridis26.9651.6194.76496forward
CNT30639555Triticum urartuNymphaea colorata83.5389.9995.321537forward
CNT30536068Triticum urartuEucalyptus grandis100.0553.4692.991841reverse complement
CNT30513456Triticum urartuJuglans regia98.5357.1294.321813forward
CNT30500477Triticum urartuCoffea canephora90.3891.3294.111663forward
CNT30269781Triticum urartuChenopodium quinoa97.0160.4192.941785forward
CNT30730500Triticum urartuCorchorus capsularis65.27101.1894.51201forward
CNT30630109Triticum urartuVigna unguiculata100.4358.6393.291848forward
CNT3044711Triticum urartuPrunus dulcis26.41101.8994.24486reverse complement
CNT3090144Triticum urartuSolanum tuberosum100.1146.9494.571842forward
CNT30193801Triticum urartuSecale cereale76.7410099.791412forward
CNT30588765Triticum urartuMusa acuminata32.9986.9695.55607reverse complement
CNT30511396Triticum urartuSolanum lycopersicum33.4267.2190.57615forward
CNT30248027Triticum urartuAvena sativa52.8399.7997.53972reverse complement
CNT30310298Triticum urartuCamelina sativa55.5467.0295.61022reverse complement
CNT30266045Triticum urartuBrassica rapa17.9374.4998.79330forward
CNT30655263Triticum urartuRosa chinensis92.3494.1391.231699forward
CNT30206724Triticum urartuHelianthus annuus80.4968.2595.611481forward
CNT30713553Triticum urartuMalus domestica golden32.9990.0694.07607forward
CNT30627950Triticum urartuDaucus carota23.42100.2392.58431forward
CNT30722943Triticum urartuTriticum spelta61.8556.5399.31138forward
CNT30154922Triticum urartuPrunus persica92.88101.1891.41709reverse complement
CNT30410430Triticum urartuPapaver somniferum80.8751.4394.151488reverse complement
CNT30646402Triticum urartuCannabis sativa59.6786.889.621098reverse complement
CNT30319706Triticum urartuAsparagus officinalis95.9261.4195.921765forward
CNT30332807Triticum urartuDioscorea rotundata76.7985.5396.041413reverse complement
CNT30103033Triticum urartuOryza rufipogon83.9799.6197.861545reverse complement

Expression of CNT30688464

Peptides detected in this lncRNA

>peptide 1 (48 aa)
MGDKLHRREGNSPDHQLRPLNDRSVIKEVGVQRQPGGLPRSSHPLKSA*

>peptide 2 (59 aa)
MPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASGTKSRQTLNTRYDPKITGVKVGQ*

>peptide 3 (68 aa)
MNGAKRSAEAVGCQNASVGERSALEGSNRESGGRRSGSENVGLSNENIGENPMPRKPKVSSARFVHGG*

>peptide 4 (66 aa)
MARFKRGKACGGYLGTQRRRKGVASDEMLRGVENKHRSGDSQIGQPFKLPAESMSRQETTWRTETS*

>peptide 5 (29 aa)
MGHVESRVNQQGPPCKAKYSWVTDSEVVP*

>peptide 6 (59 aa)
SIYDFTFMDVDKILPFSSTLGWHSLNVNGEVQKRKGLRWIPRHPETKEGRSKRRNASGS*

>peptide 7 (32 aa)
MSKCIGRGAFRLRGKQPRKRGSTKRKRECRLE*

>peptide 8 (43 aa)
MPRAEVRVPSATALKYVTDAILPGKARTTFNKRVPVPETDTGG*

>peptide 9 (38 aa)
MSRRLIGSGLVKGTEPTGAVAKASLNRAIVTAYGPEPG*

Sequence

>CNT30688464
GTTCGATCTATGATTTCACATTCATGGACGTTGATAAGATCCTTCCATTTAGTAGCACCTTAGGATGGCATAGCCTTAACGTTAATGGCGAGGTTCAAAA
GAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGG
AGATTCCCAAATAGGTCAACCTTTTAAACTGCCTGCTGAATCCATGAGCAGGCAAGAGACAACCTGGCGAACTGAAACATCTTAGTAGCCAGAGGAAAAG
AAAGCAAAAGCGATTCCCGTAGTAGCGGCGAGCGAAATGGGAGCAGCCTAAACCGTGAAAACGGGGTTGTGGGAGAGCAATACAAGCGTTGTGCTGCTAG
GCGAAGCGGTTGAGTGCCGCACCCTAGATGGCTAAAGTCCAGTAGCCGAAAGCATCACTAGCTTACGCTCTGACCCGAGTAGCATGGGGCACGTGGAATC
CCGTGTGAATCAGCAAGGACCACCTTGCAAGGCTAAATACTCCTGGGTGACCGATAGCGAAGTAGTACCGTGAGGGAAAGGTGAAAAGAACCCCCAGTGG
GTAGTGAAATAGAACGTGAAACCGTGCTGAGCTCCCAAGCAGTGGGAGGGGAAAGTGATCTCTGACCGCGTGCCTGTTGAAGAATGAGCCGGCGACTCAT
AGGCAGTGGCTTGGTTAAGGGAACGGAACCCACCGGAGCCGTAGCGAAAGCGAGTCTTAATAGGGCGATTGTCACTGCTTATGGACCCGAACCTGGGTGA
TCTATCCATGACCAGGATGAAGCTTGGATGAAACTAAGCAGAGGTCCGAACCGACTGATGTTGAAGAATCAGCGGATGAGTTGTGGTTAGGGGTGAAATG
CCACTCGAACCCAGAGCTAGCTGGTTCTCCCCGAAATGCGTTGAGGCGCAGCAGTTGACTGGACATCTAGGGGTAAAGCACTGTTTCGGTGCGGGCTGCG
CGAGCGGTACCAAATCGAGGCAAACTCTGAATACTAGATATGACCCAAAAATAACAGGGGTCAAGGTCGGCCAGTGAGACGATGGGGGATAAGCTTCATC
GTCGAGAGGGAAACAGCCCGGATCACCAGCTAAGGCCCCTAAATGACCGCTCAGTGATAAAGGAGGTGGGGGTGCAAAGACAGCCAGGAGGTTTGCCTAG
AAGCAGCCACCCTTTAAAGAGTGCGTAATAGCTCACTGATCGAGCGCCCTTGCGCTGAAGATGAACGGGGCTAAGCGATCTGCCGAAGCTGTGGGATGTC
AAAATGCATCGGTAGGGGAGCGTTCCGCCTTAGAGGGAAGCAACCGCGAAAGCGGGGGTCGACGAAGCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAA
CATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCTCCGCAAGGTTCGTCCACGGAGGGTGAGTCAGGGCCTAAGATCAGGCCGAAAGGCGTAGT
CGATGGACAACAGGTCAATATTCCTGTACTACCCCTTGTTGGTACGGAGGGACGGAGGAGGCTAGGTTAGCCGAAAGATGGTTATAGGTTTAAGGACACA
AGGTGACCCTGCTTTTTCAGGGTAAGAAGGGGTAGAGAAAATGCCTCGAGCCGAGGTCCGAGTACCAAGCGCTACGGCGCTGAAGTATGTAACTGATGCC
ATACTCCCAGGAAAAGCTCGAACGACCTTCAACAAAAGGGTACCTGTACCCGAAACCGACACAGGTGGGTAGGTAGAGAATACCTAGGGGCGCGAGACAA
CTCTCTCTAAGGAACTCGGCAAAATAGCCCCGTAACTTCG