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Detailed information on CNT30688279


BLAST search results

BLAST vs Swiss-Prot:
sp|P12862|ATPAM_WHEAT, E-value = 3e-115

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3020733Triticum urartuCitrullus lanatus1227.6795.28127forward
CNT3047959Triticum urartuPrunus dulcis10.7821.3591.23114reverse complement
CNT30127030Triticum urartuCorymbia citriodora20.2310093.46214forward
CNT30628273Triticum urartuDaucus carota19.9434.6589.57211forward

Expression of CNT30688279

Peptides detected in this lncRNA

>peptide 1 (62 aa)
MFFLRCSFLDFLLMIRSTWACTSIIFKYWVMRTTNLIHIITICKVCHILKKMSCGLKIIRYR*

>peptide 2 (55 aa)
MAFPAGTSTIDPVRLTRSPSLIAVSLPKTTIPTFSFSRFKAIPFTPLANSTISPA*

Sequence

>CNT30688279
GAATGAGATCAGAAAGGCCATCATTGGGGCAAACAATGCAATAGCTTCGGTGAGAGCAAAGCCCAAAATGGCATAACCAAATGATTGTTTAGCCAATGAT
GGATTTCGCGCCACGGAATGAATCAAAGAACTGAGGACGTTTCCAATACCGACAGCAGCTCCGGCTAAAGCAATTGTAGCAGCTCCGGCACCTATTGATT
TAGCACCTTCTAACATCTCGAGTCGAGAAAACACTTTTCTTGTCATGTTTTTCCTTCGCTGTTCTTTCTTGGATTTCTTGTTGATGATTCGAAGTACTTG
GGCCTGCACCTCCATAATTTTCAAATATTGGGTTATGCGGACCACTAATTTGATACATATTATTACAATTTGCAAGGTTTGTCACATATTAAAGAAAATG
AGCTGTGGATTGAAAATCATCAGGTATAGGTAATCATCAGGTATAGGTATAGTATCGATAGCTATTGCAGTTTTTCCAGTTTGTCTGTCCCCGATTATAA
GTTCTCGTTGACCACGGCCTATAGGAACCAGGCTATCCACTGCTTTTAAGCCTGTTTGCATGGGTTCGTGCACAGATTTACGTTCAATAATCCCTGGGGC
TTTCACTTCGACACGTCTTCGTTCGTGATCGCTTAGAGCCCCTTTTCCATCAATAGGTACTCCCAAGGCGTCGACCACACGGCCTAACATGGCCTTTCCC
GCAGGAACATCCACAATAGATCCAGTGCGCTTGACAAGATCTCCTTCTTTAATAGCGGTATCACTACCAAAGACAACAATACCTACATTCTCATTCTCAA
GATTTAAGGCGATTCCTTTCACACCGCTGGCAAATTCCACCATTTCTCCTGCTTGAATCTCGTTCAATCCATAAACACGTGCAATCCCATCTCCAACTGA
GACCACTCGACCGATCTCATCCACTTGAAAATTCGTGTAAAAGTTGGTCATTCTACTTTCTAATAGAGTCGTGAGTTCTGCAGCTCTGGGTGAGAATTCC
ATACTTTCACAAATTAGATGGATGATATTTTGAAGGGAGAAATCCGCTTTCAAGAAAA